RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PARVBQ9HBI1 364 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 ADAP2Q9NPF8 381 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 PACSIN2Q9UNF0 486 aaPredicted RBP9.37□□□□□ -0.91
TRIM28-210ENST00000597618 PDE10AQ9Y233 779 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 COMMD10Q9Y6G5 202 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 CES2O00748 559 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 CLDN4O14493 209 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 HRGP04196 525 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 PPP2R1BP30154 601 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 CEACAM8P31997 349 aaPredicted RBP9.36□□□□□ -0.91
TRIM28-210ENST00000597618 HNF4AP41235 474 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 SCTRP47872 440 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 DNASE1L1P49184 302 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 HK2P52789 917 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 HSD17B7P56937 341 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 SLC13A2Q13183 592 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 CTBP1Q13363 440 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 BMPR2Q13873 1038 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 ELAVL1Q15717 326 aaKnown RBP9.36□□□□□ -0.91
TRIM28-210ENST00000597618 ACSF3Q4G176 576 aaPredicted RBP9.36□□□□□ -0.91
TRIM28-210ENST00000597618 CATSPEREQ5SY80 951 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 ZNF549Q6P9A3 640 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 OPN5Q6U736 354 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 C4orf22Q6V702 233 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 LACC1Q8IV20 430 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 TMEM132CQ8N3T6 1108 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 TC2NQ8N9U0 490 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 TRPV3Q8NET8 790 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 SNF8Q96H20 258 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 BDH2Q9BUT1 245 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 ZNF703Q9H7S9 590 aaPredicted RBP9.36□□□□□ -0.91
TRIM28-210ENST00000597618 TUBA8Q9NY65 449 aaPredicted RBP9.36□□□□□ -0.91
TRIM28-210ENST00000597618 ADAMTS6Q9UKP5 1117 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 ATG4BQ9Y4P1 393 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 CLCA3PQ9Y6N3 262 aa9.36□□□□□ -0.91
TRIM28-210ENST00000597618 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.36□□□□□ -0.91
TRIM28-210ENST00000597618 PABPN1LA6NDY0 278 aaKnown RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 AHRRA9YTQ3 701 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 INAFM1C9JVW0 142 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 SMPD2O60906 423 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 EPPINO95925 133 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 FTCDO95954 541 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 IL2RAP01589 272 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 HIST1H2AGP0C0S8 130 aaPredicted RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 ZSCAN5DPP0CG00 497 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 SMIM10L1P0DMW3 83 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 CCL3P10147 92 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 HIST1H2ADP20671 130 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 RPL22P35268 128 aaKnown RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 TIMP3P35625 211 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 ANP32AP39687 249 aaKnown RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 RGS4P49798 205 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 CDK16Q00536 496 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 DHX9Q08211 1270 aaKnown RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 TBL3Q12788 808 aaKnown RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 SNX1Q13596 522 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 THOC5Q13769 683 aaKnown RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 DUPD1Q68J44 220 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 CASC4Q6P4E1 433 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 PRSS57Q6UWY2 283 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 CAPN12Q6ZSI9 719 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 SPNS2Q8IVW8 549 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 CIARTQ8N365 385 aaPredicted RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 LIX1Q8N485 282 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 MORN4Q8NDC4 146 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 TNIP2Q8NFZ5 429 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 OR8K3Q8NH51 312 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 OR14A16Q8NHC5 309 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 NEIL3Q8TAT5 605 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 LINC01560Q8TB33 94 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 C1orf54Q8WWF1 131 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 SLC5A11Q8WWX8 675 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 SMPDL3BQ92485 455 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 ZNF592Q92610 1267 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 DAZLQ92904 295 aaKnown RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 HSPBAP1Q96EW2 488 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 SMIM10Q96HG1 83 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 HIST1H2AHQ96KK5 128 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 CAPZA3Q96KX2 299 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 Q96MF0 132 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 PIP5K1AQ99755 562 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 HIST1H2AJQ99878 128 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 H2AFJQ9BTM1 129 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 LACRTQ9GZZ8 138 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 FBXO6Q9NRD1 293 aaPredicted RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 PRTFDC1Q9NRG1 225 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 TRMT6Q9UJA5 497 aaKnown RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 BOKQ9UMX3 212 aaPredicted RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 MRPS33Q9Y291 106 aaKnown RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 CLDN16Q9Y5I7 305 aa9.35□□□□□ -0.91
TRIM28-210ENST00000597618 EPN1Q9Y6I3 576 aaPredicted RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 ANK3Q12955 4377 aaKnown RBP9.35□□□□□ -0.91
TRIM28-210ENST00000597618 EEF1E1-BLOC1S5C9J1V9 151 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 TGFBR3LH3BV60 316 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 SMAD7O15105 426 aaKnown RBP9.34□□□□□ -0.91
TRIM28-210ENST00000597618 EEF1E1O43324 174 aaKnown RBP9.34□□□□□ -0.91
TRIM28-210ENST00000597618 NRDCO43847 1150 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 IFNA16P05015 189 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 SERPINA6P08185 405 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 F7P08709 466 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms