RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 FBXW2Q9UKT8 454 aa14.45□□□□□ -0.1
TRIM28-209ENST00000597423 SRPK3Q9UPE1 567 aa14.45□□□□□ -0.1
TRIM28-209ENST00000597423 HEATR5BQ9P2D3 2071 aa14.45□□□□□ -0.1
TRIM28-209ENST00000597423 PRSS51A0A1B0GVH4 220 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 KCNH1O95259 989 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 CAPN3P20807 821 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 CERS1P27544 350 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 CCKBRP32239 447 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 DGKQP52824 942 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 FOXM1Q08050 763 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 PDE7AQ13946 482 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 NFYCQ13952 458 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 TLR1Q15399 786 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 UGT8Q16880 541 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 CCDC157Q569K6 752 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 TICAM1Q8IUC6 712 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 DSELQ8IZU8 1212 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 DPP10Q8N608 796 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 EFCAB3Q8N7B9 438 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 C7orf57Q8NEG2 295 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 OR7A2PQ8NGA2 310 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 OR1L3Q8NH93 324 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 VPS33AQ96AX1 596 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 RAB3IPQ96QF0 476 aaPredicted RBP14.44□□□□□ -0.1
TRIM28-209ENST00000597423 OR6C1Q96RD1 312 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 NPAS2Q99743 824 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 CMKLR1Q99788 373 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 LRMDAQ9H2I8 198 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 MMADHCQ9H3L0 296 aaPredicted RBP14.44□□□□□ -0.1
TRIM28-209ENST00000597423 TAS2R1Q9NYW7 299 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 BTNL2Q9UIR0 455 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 CROTQ9UKG9 612 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 MRPS33Q9Y291 106 aaKnown RBP14.44□□□□□ -0.1
TRIM28-209ENST00000597423 PCDHA9Q9Y5H5 950 aa14.44□□□□□ -0.1
TRIM28-209ENST00000597423 COL5A1P20908 1838 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-209ENST00000597423 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-209ENST00000597423 A0A1W2PR48 441 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 C9JVG2 144 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 SGK494L7N484 410 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 FBP2O00757 339 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 GDF9O60383 454 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 ERN1O75460 977 aaKnown RBP14.43□□□□□ -0.1
TRIM28-209ENST00000597423 NR2F6P10588 404 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 LAMP1P11279 417 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 PIM1P11309 404 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-209ENST00000597423 IL1RNP18510 177 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 ALAS2P22557 587 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 ZFP36L2P47974 494 aaKnown RBP14.43□□□□□ -0.1
TRIM28-209ENST00000597423 TRPC1P48995 793 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 LIM2P55344 173 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 NCALDP61601 193 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 RUNX2Q13950 521 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 RINLQ6ZS11 566 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 PPP1R3BQ86XI6 285 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 ARHGEF39Q8N4T4 335 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 AMER3Q8N944 861 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 RCBTB1Q8NDN9 531 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 RBM15BQ8NDT2 890 aaKnown RBP14.43□□□□□ -0.1
TRIM28-209ENST00000597423 OR9A4Q8NGU2 314 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 TANKQ92844 425 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 MCUR1Q96AQ8 359 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 SLC7A6OSQ96CW6 309 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-209ENST00000597423 SH3GL1Q99961 368 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 MAPKAP1Q9BPZ7 522 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 SLC52A3Q9NQ40 469 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 KCMF1Q9P0J7 381 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 NDOR1Q9UHB4 597 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 DAPP1Q9UN19 280 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 AP3M1Q9Y2T2 418 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 ATG4BQ9Y4P1 393 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 ZNF780BQ9Y6R6 833 aa14.43□□□□□ -0.1
TRIM28-209ENST00000597423 RALGAPA1Q6GYQ0 2036 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 A0A0A6YYC8 382 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-209ENST00000597423 C15orf38-AP3S2A0A0A6YYH1 394 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 CFAP73A6NFT4 308 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 EFCAB7A8K855 629 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 I3L1I5 382 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-209ENST00000597423 RNASET2O00584 256 aaKnown RBP14.42□□□□□ -0.1
TRIM28-209ENST00000597423 CLDN4O14493 209 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 DSCR3O14972 297 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 POLR1CO15160 346 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-209ENST00000597423 ZNF749O43361 778 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 CHST10O43529 356 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 DNAJC8O75937 253 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-209ENST00000597423 ANP32DO95626 131 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 RNH1P13489 461 aaKnown RBP14.42□□□□□ -0.1
TRIM28-209ENST00000597423 IL10P22301 178 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 PPP2R1BP30154 601 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 HNRNPFP52597 415 aaKnown RBP14.42□□□□□ -0.1
TRIM28-209ENST00000597423 HNRNPH2P55795 449 aaKnown RBP14.42□□□□□ -0.1
TRIM28-209ENST00000597423 RAB38P57729 211 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 MC1RQ01726 317 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 TNFRSF17Q02223 184 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 C6orf10Q5SRN2 563 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 OR4F3Q6IEY1 312 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 OR52E8Q6IFG1 317 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 TTLL10Q6ZVT0 673 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 DGLUCYQ7Z3D6 616 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 ARPINQ7Z6K5 226 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 TMEM126BQ8IUX1 230 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms