RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 NUDT13Q86X67 352 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 GBP7Q8N8V2 638 aaPredicted RBP24.25■■□□□ 1.47
TRIM28-204ENST00000594806 SLC39A7Q92504 469 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 ZNF700Q9H0M5 742 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 KCMF1Q9P0J7 381 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 ADAM29Q9UKF5 820 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 PCDHGB7Q9Y5F8 929 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 CHD6Q8TD26 2715 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 IGHV1-45A0A0A0MS14 117 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 NSG1A0A0A6YYJ2 146 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 SERTM1A2A2V5 107 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 SAP18O00422 153 aaKnown RBP24.24■■□□□ 1.47
TRIM28-204ENST00000594806 RTCAO00442 366 aaKnown RBP24.24■■□□□ 1.47
TRIM28-204ENST00000594806 CDC123O75794 336 aaPredicted RBP24.24■■□□□ 1.47
TRIM28-204ENST00000594806 ETHE1O95571 254 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 BPGMP07738 259 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 COX6A1P12074 109 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 ICAM2P13598 275 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 H2AFXP16104 143 aaPredicted RBP24.24■■□□□ 1.47
TRIM28-204ENST00000594806 BSGP35613 385 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 ABRAXAS2Q15018 415 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 SGO1Q5FBB7 561 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 TCTN3Q6NUS6 607 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 CPEB2Q7Z5Q1 589 aaKnown RBP24.24■■□□□ 1.47
TRIM28-204ENST00000594806 C8orf44Q96CB5 159 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 PTCHD1Q96NR3 888 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 TUBB6Q9BUF5 446 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 RBCK1Q9BYM8 510 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 TMBIM4Q9HC24 238 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 LYARQ9NX58 379 aaKnown RBP24.24■■□□□ 1.47
TRIM28-204ENST00000594806 PHF11Q9UIL8 331 aa24.24■■□□□ 1.47
TRIM28-204ENST00000594806 CYR61O00622 381 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 UBFD1O14562 309 aaKnown RBP24.23■■□□□ 1.47
TRIM28-204ENST00000594806 EFNA3P52797 238 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 CHAF1BQ13112 559 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 SLAMF1Q13291 335 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 HDXQ7Z353 690 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 ANKRD37Q7Z713 158 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 SHISA5Q8N114 240 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 METTL4Q8N3J2 472 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 GALNT16Q8N428 558 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 C9orf43Q8TAL5 461 aaPredicted RBP24.23■■□□□ 1.47
TRIM28-204ENST00000594806 ABHD17AQ96GS6 310 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 SLC25A23Q9BV35 468 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 ZNF717Q9BY31 904 aaPredicted RBP24.23■■□□□ 1.47
TRIM28-204ENST00000594806 EML4Q9HC35 981 aaKnown RBP24.23■■□□□ 1.47
TRIM28-204ENST00000594806 FARSBQ9NSD9 589 aaKnown RBP24.23■■□□□ 1.47
TRIM28-204ENST00000594806 VPS29Q9UBQ0 182 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 SLC12A4Q9UP95 1085 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 DOCK10Q96BY6 2186 aa24.23■■□□□ 1.47
TRIM28-204ENST00000594806 FAM227AF5H4B4 570 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 BIRC5O15392 142 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 CRCPO75575 148 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 DNAJB5O75953 348 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 SLC18A1P54219 525 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 LY6DQ14210 128 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 PCOLCEQ15113 449 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 SOWAHCQ53LP3 525 aaPredicted RBP24.22■■□□□ 1.47
TRIM28-204ENST00000594806 IRAK1BP1Q5VVH5 260 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 CYP20A1Q6UW02 462 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 RIPOR1Q6ZS17 1223 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 MAPKAP1Q9BPZ7 522 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 SLC25A18Q9H1K4 315 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 MLXIPLQ9NP71 852 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 KCNK9Q9NPC2 374 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 PRTFDC1Q9NRG1 225 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 NBEAQ8NFP9 2946 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 IGSF10Q6WRI0 2623 aa24.22■■□□□ 1.47
TRIM28-204ENST00000594806 IGKV3D-11A0A0A0MRZ8 115 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 A0A0A6YYD5 115 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 CTNSO60931 367 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 UROSP10746 265 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 CPN2P22792 545 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 TLX1P31314 330 aaPredicted RBP24.21■■□□□ 1.47
TRIM28-204ENST00000594806 SERPINB4P48594 390 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 BTG2P78543 158 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 EEF1A2Q05639 463 aaKnown RBP24.21■■□□□ 1.47
TRIM28-204ENST00000594806 MYBPC3Q14896 1274 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 MRM1Q6IN84 353 aaKnown RBP24.21■■□□□ 1.47
TRIM28-204ENST00000594806 GPR180Q86V85 440 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 HPS6Q86YV9 775 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 NUDCD3Q8IVD9 361 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 SCUBE1Q8IWY4 988 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 BBC3Q96PG8 261 aaPredicted RBP24.21■■□□□ 1.47
TRIM28-204ENST00000594806 MECRQ9BV79 373 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 VIPAS39Q9H9C1 493 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 GPR83Q9NYM4 423 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 TIMM22Q9Y584 194 aa24.21■■□□□ 1.47
TRIM28-204ENST00000594806 TCRBV16S1A1N1A0A5B0 115 aa24.2■■□□□ 1.46
TRIM28-204ENST00000594806 OR2W5A6NFC9 320 aa24.2■■□□□ 1.46
TRIM28-204ENST00000594806 EIF4E1BA6NMX2 242 aaKnown RBP24.2■■□□□ 1.46
TRIM28-204ENST00000594806 DHRS4L1P0CG22 281 aa24.2■■□□□ 1.46
TRIM28-204ENST00000594806 OR4D2P58180 307 aa24.2■■□□□ 1.46
TRIM28-204ENST00000594806 ACTN3Q08043 901 aaPredicted RBP24.2■■□□□ 1.46
TRIM28-204ENST00000594806 BIKQ13323 160 aa24.2■■□□□ 1.46
TRIM28-204ENST00000594806 AGBL2Q5U5Z8 902 aa24.2■■□□□ 1.46
TRIM28-204ENST00000594806 LANCL3Q6ZV70 420 aa24.2■■□□□ 1.46
TRIM28-204ENST00000594806 KBTBD2Q8IY47 623 aa24.2■■□□□ 1.46
TRIM28-204ENST00000594806 FAM47BQ8NA70 645 aa24.2■■□□□ 1.46
TRIM28-204ENST00000594806 FDCSPQ8NFU4 85 aa24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms