RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ANKRD10Q9NXR5 420 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 SLC5A6Q9Y289 635 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 PCDHGB6Q9Y5F9 930 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 PCDHGA11Q9Y5H2 935 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 SPACA6W5XKT8 324 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 SCN2AQ99250 2005 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 USP9YO00507 2555 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-203ENST00000593582 EXOC1LA0A1B0GW35 172 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 GABRR3A8MPY1 467 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 CYR61O00622 381 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 MAN1A2O60476 641 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 UGDHO60701 494 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 SH3BGRLO75368 114 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 DDAH2O95865 285 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 COL6A2P12110 1019 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 GP1BBP13224 206 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 CD46P15529 392 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 HIST1H1TP22492 207 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-203ENST00000593582 ATP5A1P25705 553 aaKnown RBP14.28□□□□□ -0.12
TRIM28-203ENST00000593582 CD96P40200 585 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 PIK3CBP42338 1070 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 SSR2P43308 183 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 CLCN2P51788 898 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 HNRNPFP52597 415 aaKnown RBP14.28□□□□□ -0.12
TRIM28-203ENST00000593582 PHEXP78562 749 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 DDX39BQ13838 428 aaKnown RBP14.28□□□□□ -0.12
TRIM28-203ENST00000593582 GTF2H2Q13888 395 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 OR1C1Q15619 314 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 TSNAXIP1Q2TAA8 658 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 TECRLQ5HYJ1 363 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 LGSNQ5TDP6 509 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 KHDRBS2Q5VWX1 349 aaKnown RBP14.28□□□□□ -0.12
TRIM28-203ENST00000593582 ZNF324BQ6AW86 544 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-203ENST00000593582 GTF2H2CQ6P1K8 395 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 UBE3DQ7Z6J8 389 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 CLNKQ7Z7G1 428 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 CPAMD8Q8IZJ3 1885 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 ACOT4Q8N9L9 421 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 TMEM52Q8NDY8 209 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 NFAM1Q8NET5 270 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-203ENST00000593582 HUS1BQ8NHY5 278 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 DCAKDQ8WVC6 231 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 NR4A3Q92570 626 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 SCYL1Q96KG9 808 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 C5orf34Q96MH7 638 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 DEFB126Q9BYW3 111 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 IPPKQ9H8X2 491 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 ZNF358Q9NW07 568 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 ERRFI1Q9UJM3 462 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-203ENST00000593582 TMCO1Q9UM00 188 aa14.28□□□□□ -0.12
TRIM28-203ENST00000593582 UTP20O75691 2785 aaKnown RBP14.28□□□□□ -0.12
TRIM28-203ENST00000593582 LRRC14BA6NHZ5 514 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 TRIM49D1C9J1S8 452 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 H0YIV9 168 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 SAP18O00422 153 aaKnown RBP14.27□□□□□ -0.13
TRIM28-203ENST00000593582 RTCAO00442 366 aaKnown RBP14.27□□□□□ -0.13
TRIM28-203ENST00000593582 CTNSO60931 367 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 SMIM24O75264 130 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 SIX3O95343 332 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-203ENST00000593582 ABHD2P08910 425 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 SNRPAP09012 282 aaKnown RBP14.27□□□□□ -0.13
TRIM28-203ENST00000593582 ARL1P40616 181 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-203ENST00000593582 RAP1GDS1P52306 607 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 STX4Q12846 297 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 DEPDC1Q5TB30 811 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 SPINK14Q6IE38 97 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 ZNF793Q6ZN11 406 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 TRMT10CQ7L0Y3 403 aaKnown RBP14.27□□□□□ -0.13
TRIM28-203ENST00000593582 GOLGA7Q7Z5G4 137 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 PTGR2Q8N8N7 351 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-203ENST00000593582 MDS2Q8NDY4 140 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 ATP6V1E2Q96A05 226 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 RGMAQ96B86 450 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 PHF21BQ96EK2 531 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 SIGLEC12Q96PQ1 595 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 CSF3RQ99062 836 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 MTERF1Q99551 399 aaKnown RBP14.27□□□□□ -0.13
TRIM28-203ENST00000593582 OR51B5Q9H339 312 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 ADAP2Q9NPF8 381 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 DMRT3Q9NQL9 472 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 KCMF1Q9P0J7 381 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 XPR1Q9UBH6 696 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 OSGIN2Q9Y236 505 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 TSC22D4Q9Y3Q8 395 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 CLCA3PQ9Y6N3 262 aa14.27□□□□□ -0.13
TRIM28-203ENST00000593582 TRBV11-1A0A0K0K1C0 115 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 TGFBR3LH3BV60 316 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 FCHO1O14526 889 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 SCELO95171 688 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 CLDN9O95484 217 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 IFNA16P05015 189 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 RHOXF2BP0C7M4 288 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 PTX3P26022 381 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-203ENST00000593582 TPP2P29144 1249 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-203ENST00000593582 EEF1DP29692 281 aaKnown RBP14.26□□□□□ -0.13
TRIM28-203ENST00000593582 PPP2R1BP30154 601 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 CYB561P49447 251 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 ST13P50502 369 aaKnown RBP14.26□□□□□ -0.13
TRIM28-203ENST00000593582 MLF1P58340 268 aa14.26□□□□□ -0.13
TRIM28-203ENST00000593582 ELAVL1Q15717 326 aaKnown RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms