RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 KRT80Q6KB66 452 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 CCDC80Q76M96 950 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 TAF8Q7Z7C8 310 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 HIPK1Q86Z02 1210 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 ZDHHC21Q8IVQ6 265 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 FAM20CQ8IXL6 584 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 DHRSXQ8N5I4 330 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 CADM4Q8NFZ8 388 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 OR5K1Q8NHB7 308 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 PSMA8Q8TAA3 256 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 FLVCR1-AS1Q8TAF5 88 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 MAGEE2Q8TD90 523 aaPredicted RBP13.49□□□□□ -0.25
LIG3-205ENST00000585941 GAL3ST3Q96A11 431 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 OR2A14Q96R47 310 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 DPH2Q9BQC3 489 aaPredicted RBP13.49□□□□□ -0.25
LIG3-205ENST00000585941 PRDM7Q9NQW5 492 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 C1GALT1Q9NS00 363 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 LYARQ9NX58 379 aaKnown RBP13.49□□□□□ -0.25
LIG3-205ENST00000585941 FBXL21Q9UKT6 434 aa13.49□□□□□ -0.25
LIG3-205ENST00000585941 COLQQ9Y215 455 aaPredicted RBP13.49□□□□□ -0.25
LIG3-205ENST00000585941 TRBV23OR9-2A0A075B6M9 112 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 DPPA5A6NC42 116 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 FAM170BA6NMN3 283 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 H0YAE9 185 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 DLGAP1O14490 977 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 NOBOXO60393 691 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 DPM1O60762 260 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 SLC35G6P0C7Q6 338 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 UGT2B7P16662 529 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 CD27P26842 260 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 SLAMF1Q13291 335 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 FZD5Q13467 585 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 GAS6Q14393 721 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 SLC5A12Q1EHB4 618 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 PRSS53Q2L4Q9 553 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 SLC36A3Q495N2 470 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 NDUFAF5Q5TEU4 345 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 OR52E8Q6IFG1 317 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 MRM1Q6IN84 353 aaKnown RBP13.48□□□□□ -0.25
LIG3-205ENST00000585941 TMEM214Q6NUQ4 689 aaKnown RBP13.48□□□□□ -0.25
LIG3-205ENST00000585941 PIWIL3Q7Z3Z3 882 aaKnown RBP13.48□□□□□ -0.25
LIG3-205ENST00000585941 ASPGQ86U10 573 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 STK32CQ86UX6 486 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 IQCHQ86VS3 1027 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 CLEC4FQ8N1N0 589 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 ACOT4Q8N9L9 421 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 JPH3Q8WXH2 748 aaPredicted RBP13.48□□□□□ -0.25
LIG3-205ENST00000585941 NEURL3Q96EH8 262 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 RBM4BQ9BQ04 359 aaKnown RBP13.48□□□□□ -0.25
LIG3-205ENST00000585941 ORAI3Q9BRQ5 295 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 RBM4Q9BWF3 364 aaKnown RBP13.48□□□□□ -0.25
LIG3-205ENST00000585941 TRIM4Q9C037 500 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 AICDAQ9GZX7 198 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 KLHL31Q9H511 634 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 EPS8L2Q9H6S3 715 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 PNPLA3Q9NST1 481 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 GPATCH2Q9NW75 528 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 TEX10Q9NXF1 929 aaPredicted RBP13.48□□□□□ -0.25
LIG3-205ENST00000585941 THUMPD1Q9NXG2 353 aaKnown RBP13.48□□□□□ -0.25
LIG3-205ENST00000585941 ACTR10Q9NZ32 417 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 USE1Q9NZ43 259 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 IFT80Q9P2H3 777 aaPredicted RBP13.48□□□□□ -0.25
LIG3-205ENST00000585941 RAPGEFL1Q9UHV5 662 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 PADI4Q9UM07 663 aa13.48□□□□□ -0.25
LIG3-205ENST00000585941 OR6C74A6NCV1 312 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 METTL12A8MUP2 240 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 SUV39H1O43463 412 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 E2F6O75461 281 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 C1QCP02747 245 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 SEMG1P04279 462 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 ALPLP05186 524 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 FABP3P05413 133 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 ETFAP13804 333 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 MYF6P23409 242 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 NTSP30990 170 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 CAPGP40121 348 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 RGS19P49795 217 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 ARHGDIAP52565 204 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 SCARB2Q14108 478 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 TCEA2Q15560 299 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 SAXO2Q658L1 398 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 FIGLAQ6QHK4 219 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 ZNF793Q6ZN11 406 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 RNF130Q86XS8 419 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 MMP21Q8N119 569 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 LZICQ8WZA0 190 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 CXorf36Q9H7Y0 433 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 TM9SF3Q9HD45 589 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 SLC35C2Q9NQQ7 365 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 DNAAF2Q9NVR5 837 aaKnown RBP13.47□□□□□ -0.25
LIG3-205ENST00000585941 ANGPT4Q9Y264 503 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 ZNF451Q9Y4E5 1061 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 ASB4Q9Y574 426 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 SNX8Q9Y5X2 465 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 GSAPA4D1B5 854 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 KRBA1A5PL33 1030 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 SOX1O00570 391 aaPredicted RBP13.47□□□□□ -0.25
LIG3-205ENST00000585941 VILLO15195 856 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 ALBP02768 609 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 NUDT7P0C024 238 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms