RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PGGT1BP53609 377 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 LIPEQ05469 1076 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 EXOC3L2Q2M3D2 409 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 LGALSLQ3ZCW2 172 aaPredicted RBP10.41□□□□□ -0.74
CLK3-226ENST00000569406 LIPNQ5VXI9 398 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 WSCD1Q658N2 575 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 B3GNT8Q7Z7M8 397 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 CDKL3Q8IVW4 592 aaPredicted RBP10.41□□□□□ -0.74
CLK3-226ENST00000569406 STX19Q8N4C7 294 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 TSPEARQ8WU66 669 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 KCTD13Q8WZ19 329 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 SENP8Q96LD8 212 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 SMOQ99835 787 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 TMEM175Q9BSA9 504 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 SLC25A23Q9BV35 468 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 ABCB9Q9NP78 766 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 KIF25Q9UIL4 384 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 TRAPPC4Q9Y296 219 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 FNDC3AQ9Y2H6 1198 aaKnown RBP10.41□□□□□ -0.74
CLK3-226ENST00000569406 NR5A2O00482 541 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 UBDO15205 165 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 RFC3P40938 356 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 GRIA4P48058 902 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 HTRA4P83105 476 aaPredicted RBP10.41□□□□□ -0.74
CLK3-226ENST00000569406 MAP2K5Q13163 448 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 ZNF79Q15937 498 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 NUDT13Q86X67 352 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 ENTHD1Q8IYW4 607 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 NAGSQ8N159 534 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 ZC3H10Q96K80 434 aaKnown RBP10.41□□□□□ -0.74
CLK3-226ENST00000569406 COL21A1Q96P44 957 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 MCCC1Q96RQ3 725 aaPredicted RBP10.41□□□□□ -0.74
CLK3-226ENST00000569406 NEU1Q99519 415 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 SEMA4CQ9C0C4 833 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 NXF2Q9GZY0 626 aaKnown RBP10.41□□□□□ -0.74
CLK3-226ENST00000569406 C11orf49Q9H6J7 331 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 TDRD15B5MCY1 1934 aaKnown RBP10.41□□□□□ -0.74
CLK3-226ENST00000569406 FRMPD3Q5JV73 1810 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 LOC102723532A0A0G2JNH3 316 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 A8MXK9 166 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 INMT-MINDY4F8WBC2 141 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 KIAA0513O60268 411 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 ACVR2AP27037 513 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 CRYBB1P53674 252 aaPredicted RBP10.41□□□□□ -0.74
CLK3-226ENST00000569406 ATP12AP54707 1039 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 MC2RQ01718 297 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 IRAK1BP1Q5VVH5 260 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 CBLN2Q8IUK8 224 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 PLD6Q8N2A8 252 aaKnown RBP10.41□□□□□ -0.74
CLK3-226ENST00000569406 BVESQ8NE79 360 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 DNAJB14Q8TBM8 379 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 GLYATL2Q8WU03 294 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 WBP1Q96G27 269 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 FCRL3Q96P31 734 aaPredicted RBP10.41□□□□□ -0.74
CLK3-226ENST00000569406 MBOAT4Q96T53 435 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 PKMYT1Q99640 499 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 EVA1AQ9H8M9 152 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 EQTNQ9NQ60 294 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 YARS2Q9Y2Z4 477 aaKnown RBP10.41□□□□□ -0.74
CLK3-226ENST00000569406 YJEFN3A6XGL0 299 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 ZNF879B4DU55 563 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 LCMT2O60294 686 aaKnown RBP10.4□□□□□ -0.74
CLK3-226ENST00000569406 SELENOFO60613 162 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 CRYBA1P05813 215 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 HLA-EP13747 358 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 CHRM3P20309 590 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 PGFP49763 221 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 CSRP3P50461 194 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 VSX2P58304 361 aaPredicted RBP10.4□□□□□ -0.74
CLK3-226ENST00000569406 ILF3Q12906 894 aaKnown RBP eCLIP10.4□□□□□ -0.74
CLK3-226ENST00000569406 NFYCQ13952 458 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 GK2Q14410 553 aaPredicted RBP10.4□□□□□ -0.74
CLK3-226ENST00000569406 USP10Q14694 798 aaKnown RBP10.4□□□□□ -0.74
CLK3-226ENST00000569406 TRIQKQ629K1 86 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 FRMPD2BQ6IN97 320 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 LCN8Q6JVE9 175 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 SERINC5Q86VE9 423 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 HIPK1Q86Z02 1210 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 TOP6BLQ8N6T0 577 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 S100PBPQ96BU1 408 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 ARMC5Q96C12 935 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 P2RY11Q96G91 374 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 MED10Q9BTT4 135 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 SRRQ9GZT4 340 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 SUV39H2Q9H5I1 410 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 GPR160Q9UJ42 338 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 ORC6Q9Y5N6 252 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 OR2A25A4D2G3 310 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 FABP12A6NFH5 140 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 CCDC85CA6NKD9 419 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 CA12O43570 354 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 MT-CYBP00156 380 aaPredicted RBP10.4□□□□□ -0.74
CLK3-226ENST00000569406 LALBAP00709 142 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 GJA1P17302 382 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 SLC1A3P43003 542 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 PLK1P53350 603 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 SLC35A2P78381 396 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 PRKAA1Q13131 559 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 SKP2Q13309 424 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 FRG1Q14331 258 aaKnown RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms