RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 ACTR8Q9H981 624 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 OLAHQ9NV23 265 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 PPIEQ9UNP9 301 aaKnown RBP18.99■□□□□ 0.63
CLK3-225ENST00000569063 PCDHGA11Q9Y5H2 935 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 EXOC1LA0A1B0GW35 172 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 SYNDIG1LA6NDD5 238 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 TRIM49D1C9J1S8 452 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 TGFBR3LH3BV60 316 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 CTNSO60931 367 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 SIX3O95343 332 aaPredicted RBP18.98■□□□□ 0.63
CLK3-225ENST00000569063 CD96P40200 585 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 SLC13A2Q13183 592 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 AP5B1Q2VPB7 878 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 DEPDC1Q5TB30 811 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 LGSNQ5TDP6 509 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 ZNF793Q6ZN11 406 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 RPS19BP1Q86WX3 136 aaKnown RBP18.98■□□□□ 0.63
CLK3-225ENST00000569063 ARMC10Q8N2F6 343 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 ACOT4Q8N9L9 421 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 L3MBTL4Q8NA19 623 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 APCDD1LQ8NCL9 501 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 MDS2Q8NDY4 140 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 SSC4DQ8WTU2 575 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 CSF3RQ99062 836 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 UTP23Q9BRU9 249 aaKnown RBP18.98■□□□□ 0.63
CLK3-225ENST00000569063 CDCP1Q9H5V8 836 aa18.98■□□□□ 0.63
CLK3-225ENST00000569063 SETXQ7Z333 2677 aaKnown RBP18.98■□□□□ 0.63
CLK3-225ENST00000569063 CNTRLQ7Z7A1 2325 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 ESPL1Q14674 2120 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 A8MUA0 341 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 STX16-NPEPL1H3BU86 382 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 STX16O14662 325 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 RIPK2O43353 540 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 MYO1DO94832 1006 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 RASAL1O95294 804 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 SNRPAP09012 282 aaKnown RBP18.97■□□□□ 0.63
CLK3-225ENST00000569063 RHOXF2BP0C7M4 288 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 HIST1H1TP22492 207 aaPredicted RBP18.97■□□□□ 0.63
CLK3-225ENST00000569063 GCAP28676 217 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 ARFIP1P53367 373 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 ZNF766Q5HY98 468 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 MYLK4Q86YV6 388 aaPredicted RBP18.97■□□□□ 0.63
CLK3-225ENST00000569063 PTGR2Q8N8N7 351 aaPredicted RBP18.97■□□□□ 0.63
CLK3-225ENST00000569063 B3GNT7Q8NFL0 401 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 DNAJB8Q8NHS0 232 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 REPS1Q96D71 796 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 SIGLEC12Q96PQ1 595 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 MAPKAP1Q9BPZ7 522 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 RHOXF2Q9BQY4 288 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 OR51B5Q9H339 312 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 DMRT3Q9NQL9 472 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 PSD3Q9NYI0 1048 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 XPR1Q9UBH6 696 aa18.97■□□□□ 0.63
CLK3-225ENST00000569063 BLACEA4D250 179 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 GABRR3A8MPY1 467 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 RTCAO00442 366 aaKnown RBP18.96■□□□□ 0.63
CLK3-225ENST00000569063 CRYABP02511 175 aaKnown RBP18.96■□□□□ 0.63
CLK3-225ENST00000569063 EEF1DP29692 281 aaKnown RBP18.96■□□□□ 0.63
CLK3-225ENST00000569063 OR1C1Q15619 314 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 OR4C11Q6IEV9 310 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 ADGRD1Q6QNK2 874 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 TIFABQ6ZNK6 161 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 NR4A3Q92570 626 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 RGMAQ96B86 450 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 MTBPQ96DY7 904 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 PHF21BQ96EK2 531 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 SCYL1Q96KG9 808 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 MTERF1Q99551 399 aaKnown RBP18.96■□□□□ 0.63
CLK3-225ENST00000569063 MRPL57Q9BQC6 102 aaKnown RBP18.96■□□□□ 0.63
CLK3-225ENST00000569063 TXLNGYQ9BZA5 131 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 PRM3Q9NNZ6 103 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 ADAP2Q9NPF8 381 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 PNO1Q9NRX1 252 aaKnown RBP18.96■□□□□ 0.63
CLK3-225ENST00000569063 ANKRD10Q9NXR5 420 aa18.96■□□□□ 0.63
CLK3-225ENST00000569063 SAP18O00422 153 aaKnown RBP18.95■□□□□ 0.62
CLK3-225ENST00000569063 OR7A17O14581 309 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 SMIM24O75264 130 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 SH3BGRLO75368 114 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 DDAH2O95865 285 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 FAM153BP0C7A2 387 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 PTX3P26022 381 aaPredicted RBP18.95■□□□□ 0.62
CLK3-225ENST00000569063 TPP2P29144 1249 aaPredicted RBP18.95■□□□□ 0.62
CLK3-225ENST00000569063 PPP2R1BP30154 601 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 SSR2P43308 183 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 CLCN2P51788 898 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 GPR143P51810 404 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 TDGF1P3P51864 188 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 MLF1P58340 268 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 PHEXP78562 749 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 DDX39BQ13838 428 aaKnown RBP18.95■□□□□ 0.62
CLK3-225ENST00000569063 CPSF6Q16630 551 aaKnown RBP eCLIP18.95■□□□□ 0.62
CLK3-225ENST00000569063 FAM153CQ494X1 144 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 CLNKQ7Z7G1 428 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 RNF175Q8N4F7 328 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 TMEM151AQ8N4L1 468 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 HORMAD2Q8N7B1 307 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 WDR20Q8TBZ3 569 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 SCMH1Q96GD3 660 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 CENPKQ9BS16 269 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 NTMT1Q9BV86 223 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms