RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CLEC12AQ5QGZ9 265 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 PLET1Q6UQ28 207 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 ZNF740Q8NDX6 193 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 OR52E4Q8NGH9 312 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 COQ8BQ96D53 544 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 BTBD2Q9BX70 525 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 CFAP20Q9Y6A4 193 aaKnown RBP13.87□□□□□ -0.19
VPS35-210ENST00000568784 ANKRD34BA5PLL1 514 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 FAM25AB3EWG3 89 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 FAM25CB3EWG5 89 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 FAM25GB3EWG6 89 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 SLC28A2O43868 658 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 EIF2S1P05198 315 aaKnown RBP13.87□□□□□ -0.19
VPS35-210ENST00000568784 XKP51811 444 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 CTSCP53634 463 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 QPRTQ15274 297 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 COMMD6Q7Z4G1 85 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 LSRQ86X29 649 aaPredicted RBP13.87□□□□□ -0.19
VPS35-210ENST00000568784 IFNL1Q8IU54 200 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 LACC1Q8IV20 430 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 SYNPOQ8N3V7 929 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 CRELD1Q96HD1 420 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 PIP5K1AQ99755 562 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 TBC1D17Q9HA65 648 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 SEC14L3Q9UDX4 400 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 TRAV19A0A0A6YYK7 116 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 A0A1W2PRU2 124 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 TMEM189-UBE2V1I3L0A0 370 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 CASKO14936 926 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 LRRTM2O43300 516 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 CH25HO95992 272 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 HMGA1P17096 107 aaKnown RBP13.87□□□□□ -0.19
VPS35-210ENST00000568784 IDSP22304 550 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 TIA1P31483 386 aaKnown RBP eCLIP13.87□□□□□ -0.196e-6■□□□□ 11.3
VPS35-210ENST00000568784 IL12RB1P42701 662 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 IFITM2Q01629 132 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 TCEA2Q15560 299 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 DUSP7Q16829 419 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 RNASE12Q5GAN4 147 aaKnown RBP13.87□□□□□ -0.19
VPS35-210ENST00000568784 PAMR1Q6UXH9 720 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 TMIGD1Q6UXZ0 262 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 UBTD2Q8WUN7 234 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 C17orf50Q8WW18 174 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 KLHL6Q8WZ60 621 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 SCRN2Q96FV2 425 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 LINC00597Q9H2U6 94 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 MRPL17Q9NRX2 175 aaKnown RBP13.87□□□□□ -0.19
VPS35-210ENST00000568784 TRBV4-1A0A0J9YWV2 114 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 CCNYL3P0C7X3 344 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 PRKCDQ05655 676 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 SNAPC1Q16533 368 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 FRMPD2BQ6IN97 320 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 ZNF367Q7RTV3 350 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 DENND6BQ8NEG7 585 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 LILRB4Q8NHJ6 448 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 SAMD11Q96NU1 681 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 YME1L1Q96TA2 773 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 TSSK6Q9BXA6 273 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 ASIC5Q9NY37 505 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 STOX2Q9P2F5 926 aaPredicted RBP13.87□□□□□ -0.19
VPS35-210ENST00000568784 SLC13A4Q9UKG4 626 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 YARS2Q9Y2Z4 477 aaKnown RBP13.87□□□□□ -0.19
VPS35-210ENST00000568784 MEIOCA2RUB1 952 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 INPPL1O15357 1258 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 IL3P08700 152 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 BAK1Q16611 211 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 ATAT1Q5SQI0 421 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 NPAS4Q8IUM7 802 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 L3MBTL4Q8NA19 623 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 ZNF461Q8TAF7 563 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 IRF2BPLQ9H1B7 796 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 PCDHGA2Q9Y5H1 932 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 NME6O75414 186 aaPredicted RBP13.86□□□□□ -0.19
VPS35-210ENST00000568784 CYP17A1P05093 508 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 SRCP12931 536 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 PCGF2P35227 344 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 UGT2B10P36537 528 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 BUD31P41223 144 aaPredicted RBP13.86□□□□□ -0.19
VPS35-210ENST00000568784 SPINT3P49223 89 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 DSTNP60981 165 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 ZNF763Q0D2J5 394 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 PLAG1Q6DJT9 500 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 ERAP2Q6P179 960 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 C22orf39Q6P5X5 142 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 PITX2Q99697 317 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 HDHD2Q9H0R4 259 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 REEP4Q9H6H4 257 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 GPR52Q9Y2T5 361 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 A0A1W2PQL4 384 aaPredicted RBP13.86□□□□□ -0.19
VPS35-210ENST00000568784 GSAPA4D1B5 854 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 NNMTP40261 264 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 CDC20Q12834 499 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 CNTN1Q12860 1018 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 IL18Q14116 193 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 MRPL58Q14197 206 aaKnown RBP13.86□□□□□ -0.19
VPS35-210ENST00000568784 RBM45Q8IUH3 476 aaKnown RBP13.86□□□□□ -0.19
VPS35-210ENST00000568784 FAM46DQ8NEK8 389 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 OR8J2Q8NGG1 315 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 CCDC177Q9NQR7 707 aaPredicted RBP13.86□□□□□ -0.19
VPS35-210ENST00000568784 FBXL12Q9NXK8 326 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms