RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 YARS2Q9Y2Z4 477 aaKnown RBP14.98□□□□□ -0.01
CLN3-229ENST00000567963 TCRBV9S1A1TA0A576 114 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 FAM187AA6NFU0 413 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 E9PLN8 166 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 PRRG2O14669 202 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 PEX1O43933 1283 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 PRKNO60260 465 aaPredicted RBP14.97□□□□□ -0.01
CLN3-229ENST00000567963 COX6B1P14854 86 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 TFEBP19484 476 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 CD22P20273 847 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 PTGER1P34995 402 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 ZKSCAN8Q15776 578 aaPredicted RBP14.97□□□□□ -0.01
CLN3-229ENST00000567963 PDK4Q16654 411 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 GDF7Q7Z4P5 450 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 MDGA2Q7Z553 956 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 CLNKQ7Z7G1 428 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 SNX31Q8N9S9 440 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 PDPRQ8NCN5 879 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 MTFMTQ96DP5 389 aaKnown RBP14.97□□□□□ -0.01
CLN3-229ENST00000567963 VKORC1Q9BQB6 163 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 CCDC77Q9BR77 488 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 EFCAB11Q9BUY7 163 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 ADAP2Q9NPF8 381 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 CD274Q9NZQ7 290 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 PKDREJQ9NTG1 2253 aa14.97□□□□□ -0.01
CLN3-229ENST00000567963 SYNDIG1LA6NDD5 238 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 TMEM200CA6NKL6 621 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 FAM159BA6NKW6 160 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 ADAM10O14672 748 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 TFECO14948 347 aaPredicted RBP14.96□□□□□ -0.01
CLN3-229ENST00000567963 CTNSO60931 367 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 ZFAND5O76080 213 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 C1QAP02745 245 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 EPORP19235 508 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 ELAVL4P26378 380 aaKnown RBP14.96□□□□□ -0.01
CLN3-229ENST00000567963 CERS1P27544 350 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 GP5P40197 560 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 RFC3P40938 356 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 KCNC1P48547 511 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 SSR4P51571 173 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 RAB10P61026 200 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 LAPTM5Q13571 262 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 EFTUD2Q15029 972 aaKnown RBP eCLIP14.96□□□□□ -0.013e-6■■■■□ 22
CLN3-229ENST00000567963 ELAVL1Q15717 326 aaKnown RBP14.96□□□□□ -0.01
CLN3-229ENST00000567963 C3P1Q6ZMU1 363 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 MAATS1Q7Z4T9 603 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 TMEM132CQ8N3T6 1108 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 ZFP62Q8NB50 900 aaPredicted RBP14.96□□□□□ -0.01
CLN3-229ENST00000567963 PHF10Q8WUB8 498 aaKnown RBP14.96□□□□□ -0.01
CLN3-229ENST00000567963 KIAA1191Q96A73 305 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 F2RL3Q96RI0 385 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 DMRTA2Q96SC8 542 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 CSF3RQ99062 836 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 COPS7BQ9H9Q2 264 aaPredicted RBP14.96□□□□□ -0.01
CLN3-229ENST00000567963 LIN28AQ9H9Z2 209 aaKnown RBP14.96□□□□□ -0.01
CLN3-229ENST00000567963 GRHL1Q9NZI5 618 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 KCMF1Q9P0J7 381 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 VTI1BQ9UEU0 232 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 CLCA3PQ9Y6N3 262 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 OTOGQ6ZRI0 2925 aa14.96□□□□□ -0.01
CLN3-229ENST00000567963 A0A1B0GTH9 108 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 C19orf84I3L1E1 186 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 RAD51CO43502 376 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 HS6ST1O60243 411 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 CCNT2O60583 730 aaKnown RBP14.95□□□□□ -0.02
CLN3-229ENST00000567963 IFNA16P05015 189 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 GPX6P59796 221 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 GPR85P60893 370 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 TGM3Q08188 693 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 CHIT1Q13231 466 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 BMPR2Q13873 1038 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 RCN2Q14257 317 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 TBCCQ15814 346 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 HIST2H2ACQ16777 129 aaPredicted RBP14.95□□□□□ -0.02
CLN3-229ENST00000567963 HIST2H2AA3Q6FI13 130 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 C16orf47Q6ZP98 133 aaPredicted RBP14.95□□□□□ -0.02
CLN3-229ENST00000567963 EID3Q8N140 333 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 SPATA4Q8NEY3 305 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 FAM57AQ8TBR7 257 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 PTPMT1Q8WUK0 201 aaPredicted RBP14.95□□□□□ -0.02
CLN3-229ENST00000567963 KCNC2Q96PR1 638 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 ALOXE3Q9BYJ1 711 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 TRIM8Q9BZR9 551 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 CD244Q9BZW8 370 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 MYOTQ9UBF9 498 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 RNF112Q9ULX5 631 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 PYCARDQ9ULZ3 195 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 TACC2O95359 2948 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 OR2J2O76002 312 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 GSTA2P09210 222 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 SPRP35270 261 aaPredicted RBP14.95□□□□□ -0.02
CLN3-229ENST00000567963 PTGS2P35354 604 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 CASP2P42575 452 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 IRF8Q02556 426 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 E2F2Q14209 437 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 CMPK2Q5EBM0 449 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 PAGE2BQ5JRK9 111 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 GRTP1Q5TC63 336 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 UBE3DQ7Z6J8 389 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 ISCA2Q86U28 154 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 423.3 ms