RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SPSB2Q99619 263 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 PAIP2Q9BPZ3 127 aaKnown RBP16.28■□□□□ 0.2
CLN3-217ENST00000565354 RBCK1Q9BYM8 510 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 SLC29A3Q9BZD2 475 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 CLK4Q9HAZ1 481 aaKnown RBP16.28■□□□□ 0.2
CLN3-217ENST00000565354 C3orf18Q9UK00 162 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 SCN3AQ9NY46 2000 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 CSMD1Q96PZ7 3565 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 IGLV3-12A0A075B6K2 115 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 UQCRHLA0A096LP55 91 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 FOXE1O00358 373 aaPredicted RBP16.27■□□□□ 0.2
CLN3-217ENST00000565354 CHST10O43529 356 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 ESRRBO95718 433 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 DDAH2O95865 285 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 ENO1P06733 434 aaKnown RBP16.27■□□□□ 0.2
CLN3-217ENST00000565354 UQCRHP07919 91 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 IL10P22301 178 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 EMP2P54851 167 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 MTTPP55157 894 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 DEPDC1Q5TB30 811 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 ZNF787Q6DD87 383 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 ABHD17CQ6PCB6 329 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 NUDCD3Q8IVD9 361 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 ZC3H7AQ8IWR0 971 aaKnown RBP16.27■□□□□ 0.2
CLN3-217ENST00000565354 AGAP11Q8TF27 550 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 RGMAQ96B86 450 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 CNDP1Q96KN2 507 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 IP6K3Q96PC2 410 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 SERINC2Q96SA4 455 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 TBCDQ9BTW9 1192 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 GATA5Q9BWX5 397 aaPredicted RBP16.27■□□□□ 0.2
CLN3-217ENST00000565354 TRIM55Q9BYV6 548 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 TGIF2Q9GZN2 237 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 AICDAQ9GZX7 198 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 ACBD3Q9H3P7 528 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 SEMA3GQ9NS98 782 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 MKL2Q9ULH7 1088 aa16.27■□□□□ 0.2
CLN3-217ENST00000565354 A0A1B0GTL3 188 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 WDR91A4D1P6 747 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 IDSB3KWA1 339 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 C4orf51C9J302 202 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 SORBS2O94875 1100 aaKnown RBP16.26■□□□□ 0.19
CLN3-217ENST00000565354 BMP10O95393 424 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 BPGMP07738 259 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 RNH1P13489 461 aaKnown RBP16.26■□□□□ 0.19
CLN3-217ENST00000565354 JAK1P23458 1154 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 CERS1P27544 350 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 SERPINB4P48594 390 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 PGDP52209 483 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 RCN2Q14257 317 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 NADK2Q4G0N4 442 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 AGBL2Q5U5Z8 902 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 HHATQ5VTY9 493 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 FAAH2Q6GMR7 532 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 MAMDC2Q7Z304 686 aaPredicted RBP16.26■□□□□ 0.19
CLN3-217ENST00000565354 METTL21AQ8WXB1 218 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 PKNOX2Q96KN3 472 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 OR1F2PQ96R84 312 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 TRMOQ9BU70 441 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 NPLQ9BXD5 320 aaPredicted RBP16.26■□□□□ 0.19
CLN3-217ENST00000565354 SHCBP1LQ9BZQ2 653 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 VIPAS39Q9H9C1 493 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 EML4Q9HC35 981 aaKnown RBP16.26■□□□□ 0.19
CLN3-217ENST00000565354 NMRK1Q9NWW6 199 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 NKIRAS1Q9NYS0 192 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 AHSPQ9NZD4 102 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 SLC12A4Q9UP95 1085 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 SPACA6W5XKT8 324 aa16.26■□□□□ 0.19
CLN3-217ENST00000565354 RTCAO00442 366 aaKnown RBP16.25■□□□□ 0.19
CLN3-217ENST00000565354 MANBAO00462 879 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 NPHS1O60500 1241 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 ULK1O75385 1050 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 CDC123O75794 336 aaPredicted RBP16.25■□□□□ 0.19
CLN3-217ENST00000565354 TBX6O95947 436 aaPredicted RBP16.25■□□□□ 0.19
CLN3-217ENST00000565354 PDYNP01213 254 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 UMODP07911 640 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 FHP07954 510 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 MMP11P24347 488 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 COL8A1P27658 744 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 DCTP40126 519 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 CUL3Q13618 768 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 OR4C11Q6IEV9 310 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 ZCCHC23Q6ZST2 131 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 CA13Q8N1Q1 262 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 ADAMTS18Q8TE60 1221 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 TBC1D20Q96BZ9 403 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 QRFPRQ96P65 431 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 PSD3Q9NYI0 1048 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 ZNF225Q9UK10 706 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 MRPS33Q9Y291 106 aaKnown RBP16.25■□□□□ 0.19
CLN3-217ENST00000565354 TIMM22Q9Y584 194 aa16.25■□□□□ 0.19
CLN3-217ENST00000565354 TMEM120BA0PK00 339 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 ARGFXA6NJG6 315 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 AGPSO00116 658 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 B4GALT2O60909 372 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 JRKO75564 520 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 HIST1H1TP22492 207 aaPredicted RBP16.24■□□□□ 0.19
CLN3-217ENST00000565354 ATP5A1P25705 553 aaKnown RBP16.24■□□□□ 0.19
CLN3-217ENST00000565354 ETV4P43268 484 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 TSFMP43897 325 aaKnown RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms