RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SLITRK5O94991 958 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 GSTM1P09488 218 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 ITGA2P17301 1181 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 CBLP22681 906 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 HLA-FP30511 346 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 CRISP1P54107 249 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 C21orf58P58505 322 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 C2orf80Q0P641 193 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 NDUFA5Q16718 116 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 TIMM50Q3ZCQ8 353 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 VASH1Q7L8A9 365 aaPredicted RBP12.63□□□□□ -0.39
CLN3-210ENST00000563874 UBQLNLQ8IYU4 475 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 CELF5Q8N6W0 485 aaKnown RBP12.63□□□□□ -0.39
CLN3-210ENST00000563874 OR52N2Q8NGI0 321 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 GEMIN6Q8WXD5 167 aaKnown RBP12.63□□□□□ -0.39
CLN3-210ENST00000563874 TTYH2Q9BSA4 534 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 MMP28Q9H239 520 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 REEP4Q9H6H4 257 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 FTSJ1Q9UET6 329 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 SNX4O95219 450 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 ETV6P41212 452 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 RFX2P48378 723 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 PTPN5P54829 565 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 TAS2R50P59544 299 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 TRIM60Q495X7 471 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 SPIN4Q56A73 249 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 ZNF544Q6NX49 715 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 ZNF517Q6ZMY9 492 aaPredicted RBP12.62□□□□□ -0.39
CLN3-210ENST00000563874 TMEM159Q96B96 161 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 PPCDCQ96CD2 204 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 TRMT2BQ96GJ1 504 aaKnown RBP12.62□□□□□ -0.39
CLN3-210ENST00000563874 SCLYQ96I15 445 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 C19orf43Q9BQ61 176 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 RIOK2Q9BVS4 552 aaKnown RBP12.62□□□□□ -0.39
CLN3-210ENST00000563874 SORBS1Q9BX66 1292 aaKnown RBP12.62□□□□□ -0.39
CLN3-210ENST00000563874 FAM83DQ9H4H8 585 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 DYRK4Q9NR20 520 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 THSD1Q9NS62 852 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 RNF186Q9NXI6 227 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 ANAPC1Q9H1A4 1944 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 A0A1W2PQ45 241 aaPredicted RBP12.62□□□□□ -0.39
CLN3-210ENST00000563874 A0A1W2PQY0 241 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 ZAR1LA6NP61 321 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 NRG2O14511 850 aaPredicted RBP12.62□□□□□ -0.39
CLN3-210ENST00000563874 FFAR1O14842 300 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 SEMA3DO95025 777 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 PTPN2P17706 415 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 ZNF763Q0D2J5 394 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 C9orf43Q8TAL5 461 aaPredicted RBP12.62□□□□□ -0.39
CLN3-210ENST00000563874 ASB15Q8WXK1 588 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 TMEM203Q969S6 136 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 WRAP53Q9BUR4 548 aaKnown RBP12.62□□□□□ -0.39
CLN3-210ENST00000563874 BEX2Q9BXY8 128 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 BRF2Q9HAW0 419 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 LSM7Q9UK45 103 aaKnown RBP12.62□□□□□ -0.39
CLN3-210ENST00000563874 BACE2Q9Y5Z0 518 aa12.62□□□□□ -0.39
CLN3-210ENST00000563874 FADS2P1A8MWK0 482 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 H3BN98 237 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 GUCY1B2O75343 617 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 SLCO2B1O94956 709 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 RECKO95980 971 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 FHP07954 510 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 PCSK2P16519 638 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 GABRR2P28476 465 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 LIM2P55344 173 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 SLAMF1Q13291 335 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 ZFP69Q49AA0 526 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 C19orf48Q6RUI8 117 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 TMPRSS11AQ6ZMR5 421 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 CAMKMTQ7Z624 323 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.61□□□□□ -0.39
CLN3-210ENST00000563874 ST13P5Q8NFI4 369 aaPredicted RBP12.61□□□□□ -0.39
CLN3-210ENST00000563874 MAGEB10Q96LZ2 347 aaPredicted RBP12.61□□□□□ -0.39
CLN3-210ENST00000563874 TMEM175Q9BSA9 504 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 TAPBPLQ9BX59 468 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 MRPL9Q9BYD2 267 aaKnown RBP12.61□□□□□ -0.39
CLN3-210ENST00000563874 PLSCR3Q9NRY6 295 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 CRNNQ9UBG3 495 aaPredicted RBP12.61□□□□□ -0.39
CLN3-210ENST00000563874 ENPP4Q9Y6X5 453 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 V9GYH0 126 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 ANKRD34BA5PLL1 514 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 PSIP1O75475 530 aaKnown RBP12.61□□□□□ -0.39
CLN3-210ENST00000563874 KLK1P06870 262 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 CD72P21854 359 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 TIE1P35590 1138 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 GPR50Q13585 617 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 SLBPQ14493 270 aaKnown RBP eCLIP12.61□□□□□ -0.39
CLN3-210ENST00000563874 PUM1Q14671 1186 aaKnown RBP eCLIP12.61□□□□□ -0.39
CLN3-210ENST00000563874 ZNF79Q15937 498 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 SPOUT1Q5T280 376 aaKnown RBP12.61□□□□□ -0.39
CLN3-210ENST00000563874 LIPKQ5VXJ0 399 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 MED27Q6P2C8 311 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 TNFAIP8L2Q6P589 184 aaPredicted RBP12.61□□□□□ -0.39
CLN3-210ENST00000563874 TRIM40Q6P9F5 258 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 NLRP8Q86W28 1048 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 GPR65Q8IYL9 337 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 FIBINQ8TAL6 211 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 IGSF21Q96ID5 467 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 CCDC32Q9BV29 185 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 BHLHE41Q9C0J9 482 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms