RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 LPCAT4Q643R3 524 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ANO7Q6IWH7 933 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 REEP3Q6NUK4 255 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ZCCHC8Q6NZY4 707 aaKnown RBP7.16□□□□□ -1.26
VPS39-204ENST00000561818 TMEM154Q6P9G4 183 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ABHD17CQ6PCB6 329 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ZCCHC12Q6PEW1 402 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 SHQ1Q6PI26 577 aaKnown RBP7.16□□□□□ -1.26
VPS39-204ENST00000561818 SPESP1Q6UW49 350 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ANGPTL8Q6UXH0 198 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 DNAJC14Q6Y2X3 702 aaPredicted RBP7.16□□□□□ -1.26
VPS39-204ENST00000561818 TAF8Q7Z7C8 310 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 PAQR7Q86WK9 346 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 NRROSQ86YC3 692 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ZDHHC21Q8IVQ6 265 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.16□□□□□ -1.26
VPS39-204ENST00000561818 MSRB3Q8IXL7 192 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ZZZ3Q8IYH5 903 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 LILRA2Q8N149 483 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 PIK3C3Q8NEB9 887 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 TOR1AIP2Q8NFQ8 470 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 MIPOL1Q8TD10 442 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 CREB3L4Q8TEY5 395 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 CLDN23Q96B33 292 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 SLCO4A1Q96BD0 722 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 RMND5BQ96G75 393 aaPredicted RBP7.16□□□□□ -1.26
VPS39-204ENST00000561818 VPS50Q96JG6 964 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ZNF578Q96N58 590 aaPredicted RBP7.16□□□□□ -1.26
VPS39-204ENST00000561818 IL17FQ96PD4 163 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 BBS4Q96RK4 519 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 EPYCQ99645 322 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 CIB1Q99828 191 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 CCDC3Q9BQI4 270 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 PELOQ9BRX2 385 aaKnown RBP7.16□□□□□ -1.26
VPS39-204ENST00000561818 DOHHQ9BU89 302 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ADI1Q9BV57 179 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ACAT2Q9BWD1 397 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ARMC7Q9H6L4 198 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ERVMER34-1Q9H9K5 563 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 SLC35C2Q9NQQ7 365 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 PRDM8Q9NQV8 689 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 THSD1Q9NS62 852 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 TM7SF3Q9NS93 570 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ACTR10Q9NZ32 417 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 SLAMF8Q9P0V8 285 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 TAAR2Q9P1P5 351 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 OAZ3Q9UMX2 235 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 MYRFQ9Y2G1 1151 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 WDR37Q9Y2I8 494 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 FAM32AQ9Y421 112 aaKnown RBP7.16□□□□□ -1.26
VPS39-204ENST00000561818 SLC22A7Q9Y694 548 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 CSNK1G3Q9Y6M4 447 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 PCM1Q15154 2024 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 A0A087WXM4 84 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 IGHV1OR15-9A0A0B4J2B8 117 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 OR52A4PA6NMU1 304 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 CASC3O15234 703 aaKnown RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 ERI3O43414 337 aaKnown RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 UGT2B11O75310 529 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 SORBS2O94875 1100 aaKnown RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 H6PDO95479 791 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 ETHE1O95571 254 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 CPSF4O95639 269 aaKnown RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 CLPTM1O96005 669 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 ASGR2P07307 311 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 ARAFP10398 606 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 NR2F6P10588 404 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 THRBP10828 461 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 ETS2P15036 469 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 GNSP15586 552 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 MYF6P23409 242 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 GPC1P35052 558 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 HOXD12P35452 270 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 MSX2P35548 267 aaPredicted RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 SOAT1P35610 550 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 RPL5P46777 297 aaKnown RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 CRISP3P54108 245 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 NR1H2P55055 460 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 ITGA1P56199 1179 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 PCBP4P57723 403 aaKnown RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 SELENOWP63302 87 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 HBA1P69905 142 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 PSPHP78330 225 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 HPCAP84074 193 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 CDK6Q00534 326 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 TEKQ02763 1124 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 HHEXQ03014 270 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 SCARB2Q14108 478 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 UBXN2BQ14CS0 331 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 CEBPEQ15744 281 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 LRRC23Q53EV4 343 aaPredicted RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 IFI44LQ53G44 452 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 SFT2D3Q587I9 215 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 TCTE1Q5JU00 501 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 COL13A1Q5TAT6 717 aaPredicted RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 NDUFAF5Q5TEU4 345 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 SAXO2Q658L1 398 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 OR2T5Q6IEZ7 315 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 MRM1Q6IN84 353 aaKnown RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 SLC30A9Q6PML9 568 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms