RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ZNF438Q7Z4V0 828 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 HJURPQ8NCD3 748 aaPredicted RBP11.8□□□□□ -0.52
LDLR-205ENST00000557933 OR52E4Q8NGH9 312 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 HTATIP2Q9BUP3 242 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 SLC29A3Q9BZD2 475 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 SPNS1Q9H2V7 528 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 RPRD1BQ9NQG5 326 aaKnown RBP11.8□□□□□ -0.52
LDLR-205ENST00000557933 TRPM5Q9NZQ8 1165 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 ERVW-1Q9UQF0 538 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 SNX11Q9Y5W9 270 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 HSPE1-MOB4S4R3N1 261 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 V9GYH0 126 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 A0A1W2PQL4 384 aaPredicted RBP11.8□□□□□ -0.52
LDLR-205ENST00000557933 DVL2O14641 736 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 CSO75390 466 aaKnown RBP11.8□□□□□ -0.52
LDLR-205ENST00000557933 ZDHHC11BP0C7U3 371 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 CCNYL3P0C7X3 344 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 PAX3P23760 479 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 APEX1P27695 318 aaKnown RBP11.8□□□□□ -0.52
LDLR-205ENST00000557933 ETV3P41162 512 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 HTR2BP41595 481 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 MAGEA11P43364 429 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 CTSCP53634 463 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 LIM2P55344 173 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 CNTN1Q12860 1018 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 GPR50Q13585 617 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 IFI44LQ53G44 452 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 Q6ZVU0 165 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 ASB11Q8WXH4 323 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 NEIL2Q969S2 332 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 GABARAPL3Q9BY60 117 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 ACER3Q9NUN7 267 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 PLAGL1Q9UM63 463 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 TRIOO75962 3097 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 GON4LQ3T8J9 2241 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 REV3LO60673 3130 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 SEMA7AO75326 666 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 CHRNB1P11230 501 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 PSKH1P11801 424 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 HMGA1P17096 107 aaKnown RBP11.79□□□□□ -0.52
LDLR-205ENST00000557933 GABRB1P18505 474 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 IDSP22304 550 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 MAPK1P28482 360 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 PTPN5P54829 565 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 CDC42P60953 191 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 MPEG1Q2M385 716 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 RNASE12Q5GAN4 147 aaKnown RBP11.79□□□□□ -0.52
LDLR-205ENST00000557933 MACC1Q6ZN28 852 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 RFPL4BQ6ZWI9 263 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 ZNF557Q8N988 423 aaPredicted RBP11.79□□□□□ -0.52
LDLR-205ENST00000557933 CSGALNACT1Q8TDX6 532 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 ARMC5Q96C12 935 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 BCL7BQ9BQE9 202 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 B4GALT6Q9UBX8 382 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 A0A0X1KG70 313 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 C1orf226A1L170 272 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 FFAR1O14842 300 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 TSPAN6O43657 245 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 TLX2O43763 284 aaPredicted RBP11.79□□□□□ -0.52
LDLR-205ENST00000557933 SCO1O75880 301 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 BCHEP06276 602 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 CKMP06732 381 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 KLK1P06870 262 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 C1SP09871 688 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 TSPAN19P0C672 248 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 SDC2P34741 201 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 UGT2B10P36537 528 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 ATN1P54259 1190 aaPredicted RBP11.79□□□□□ -0.52
LDLR-205ENST00000557933 TAS2R50P59544 299 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 RAB8AP61006 207 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 SRSF11Q05519 484 aaKnown RBP11.79□□□□□ -0.52
LDLR-205ENST00000557933 MTAPQ13126 283 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 C11orf96Q7Z7L8 435 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 ATP6V1C2Q8NEY4 427 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 OR7G3Q8NG95 312 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 OTULINQ96BN8 352 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 ARSGQ96EG1 525 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 ART5Q96L15 291 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 DCLRE1CQ96SD1 692 aaKnown RBP11.79□□□□□ -0.52
LDLR-205ENST00000557933 EPYCQ99645 322 aa11.79□□□□□ -0.52
LDLR-205ENST00000557933 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.78□□□□□ -0.52
LDLR-205ENST00000557933 SYNDIG1LA6NDD5 238 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 CH25HO95992 272 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 JUPP14923 745 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 RNF144AP50876 292 aaPredicted RBP11.78□□□□□ -0.52
LDLR-205ENST00000557933 MVDP53602 400 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 CDK6Q00534 326 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 C2orf80Q0P641 193 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 LMAN2Q12907 356 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 PIN1Q13526 163 aaPredicted RBP11.78□□□□□ -0.52
LDLR-205ENST00000557933 TCTN1Q2MV58 587 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 AGTRAPQ6RW13 159 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 DPY19L3Q6ZPD9 716 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 FCGR1BQ92637 280 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 UCN3Q969E3 161 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 C1GALT1C1Q96EU7 318 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 IL17FQ96PD4 163 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 YIPF4Q9BSR8 244 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 DYRK4Q9NR20 520 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 CFL2Q9Y281 166 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms