RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 TFEBP19484 476 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 SPRP35270 261 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-235ENST00000557740 PTGER4P35408 488 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 RFC3P40938 356 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 KCNC1P48547 511 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 HNRNPFP52597 415 aaKnown RBP13.64□□□□□ -0.23
SHMT2-235ENST00000557740 LIM2P55344 173 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 IRF8Q02556 426 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 CHIT1Q13231 466 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 EFTUD2Q15029 972 aaKnown RBP eCLIP13.64□□□□□ -0.238e-9■■■■■ 30.8
SHMT2-235ENST00000557740 ELAVL1Q15717 326 aaKnown RBP13.64□□□□□ -0.23
SHMT2-235ENST00000557740 ZKSCAN8Q15776 578 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-235ENST00000557740 RNFT1Q5M7Z0 435 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 ADNP2Q6IQ32 1131 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 C3orf62Q6ZUJ4 267 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 RAPH1Q70E73 1250 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 CYS1Q717R9 158 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 LRRC70Q7Z2Q7 622 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 GDF7Q7Z4P5 450 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 CCDC25Q86WR0 208 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 TMEM132CQ8N3T6 1108 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 TMEM52Q8NDY8 209 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 SPATA4Q8NEY3 305 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 KIAA1191Q96A73 305 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 WDR34Q96EX3 536 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 KCNC2Q96PR1 638 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 CSF3RQ99062 836 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 TIMMDC1Q9NPL8 285 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 GRHL1Q9NZI5 618 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 NUDT4Q9NZJ9 180 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 PTBP2Q9UKA9 531 aaKnown RBP13.64□□□□□ -0.23
SHMT2-235ENST00000557740 DAPP1Q9UN19 280 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 PPIEQ9UNP9 301 aaKnown RBP13.64□□□□□ -0.23
SHMT2-235ENST00000557740 ERVK-11Q9UQG0 969 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 UTP11Q9Y3A2 253 aaKnown RBP13.64□□□□□ -0.23
SHMT2-235ENST00000557740 CLCA3PQ9Y6N3 262 aa13.64□□□□□ -0.23
SHMT2-235ENST00000557740 A8MVJ9 347 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 SUPT3HB4E1H0 165 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 CYR61O00622 381 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 PEX1O43933 1283 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 PRAMEF4O60810 478 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 SUPT3HO75486 399 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 ZFAND5O76080 213 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 CLDN14O95500 239 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 TBX6O95947 436 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-235ENST00000557740 TUBB4AP04350 444 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 CD22P20273 847 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 STX2P32856 288 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 PTGER1P34995 402 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 MSH2P43246 934 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 PLTPP55058 493 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 STX4Q12846 297 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 BMPR2Q13873 1038 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 KBTBD12Q3ZCT8 623 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 GRTP1Q5TC63 336 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 PRAMEF9Q5VWM5 478 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 TBC1D1Q86TI0 1168 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-235ENST00000557740 SULF2Q8IWU5 870 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 PPM1NQ8N819 430 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 SRFBP1Q8NEF9 429 aaKnown RBP13.63□□□□□ -0.23
SHMT2-235ENST00000557740 STAG3L4Q8TBR4 150 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 DAZLQ92904 295 aaKnown RBP13.63□□□□□ -0.23
SHMT2-235ENST00000557740 UBE2E3Q969T4 207 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 UBXN10Q96LJ8 280 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 F2RL3Q96RI0 385 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 PHACTR1Q9C0D0 580 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 ALG9Q9H6U8 611 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 HPF1Q9NWY4 346 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 ZNF223Q9UK11 482 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-235ENST00000557740 ZNF490Q9ULM2 529 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-235ENST00000557740 YARS2Q9Y2Z4 477 aaKnown RBP13.63□□□□□ -0.23
SHMT2-235ENST00000557740 CLDN16Q9Y5I7 305 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 SPACA6W5XKT8 324 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 PCNX1Q96RV3 2341 aa13.63□□□□□ -0.23
SHMT2-235ENST00000557740 E9PLN8 166 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 ZNHIT1O43257 154 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 CDC40O60508 579 aaKnown RBP eCLIP13.62□□□□□ -0.23
SHMT2-235ENST00000557740 PCNAP12004 261 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 GPX6P59796 221 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 GPR85P60893 370 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 CAV1Q03135 178 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 TBCCQ15814 346 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 HSDL2Q6YN16 418 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 C3P1Q6ZMU1 363 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 NCCRP1Q6ZVX7 275 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-235ENST00000557740 MDGA2Q7Z553 956 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 CMC1Q7Z7K0 106 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 DOLPP1Q86YN1 238 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 GPALPP1Q8IXQ4 340 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 OR14A16Q8NHC5 309 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 PHF10Q8WUB8 498 aaKnown RBP13.62□□□□□ -0.23
SHMT2-235ENST00000557740 ASB15Q8WXK1 588 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 PHF12Q96QT6 1004 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 VKORC1Q9BQB6 163 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 TBCDQ9BTW9 1192 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 ALOXE3Q9BYJ1 711 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 CD244Q9BZW8 370 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 RAB17Q9H0T7 212 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 NMRAL1Q9HBL8 299 aa13.62□□□□□ -0.23
SHMT2-235ENST00000557740 LYRM4Q9HD34 91 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms