RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 EFCAB11Q9BUY7 163 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 UCK2Q9BZX2 261 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 RC3H2Q9HBD1 1191 aaKnown RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 EXOSC4Q9NPD3 245 aaKnown RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 NFKBIL1Q9UBC1 381 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 OGDHLQ9ULD0 1010 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 EXO1Q9UQ84 846 aaKnown RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 HS3ST2Q9Y278 367 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 PRAMEF33A0A0G2JMD5 474 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 MEIOCA2RUB1 952 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 PRAMEF10O60809 474 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 C6orf47O95873 294 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 GASTP01350 101 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 YES1P07947 543 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 SRCP12931 536 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 SELPP16109 830 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 CRYBB2P43320 205 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 FLT3LGP49771 235 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 SMIM11AP58511 58 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 OCLNQ16625 522 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 ZNF385BQ569K4 471 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 C22orf39Q6P5X5 142 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 HSDL2Q6YN16 418 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 GALNT12Q8IXK2 581 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 NATD1Q8N6N6 113 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 FBXO15Q8NCQ5 510 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 OR8J1Q8NGP2 316 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 BCL7CQ8WUZ0 217 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 VOPP1Q96AW1 172 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 TMEM159Q96B96 161 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 PPP1R16AQ96I34 528 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 TEFMQ96QE5 360 aaKnown RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 ARHGAP39Q9C0H5 1083 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 TAS2R16Q9NYV7 291 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 CYP2A6P11509 494 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 DDX5P17844 614 aaKnown RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 CXCR2P25025 360 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 CCND3P30281 292 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 GATMP50440 423 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 ZNF157P51786 506 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 RPS13P62277 151 aaKnown RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 SYTL3Q4VX76 610 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 NXNL2Q5VZ03 156 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 C12orf73Q69YU5 71 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 KIAA1841Q6NSI8 718 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 SERPINA13PQ6UXR4 307 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 SLCO4C1Q6ZQN7 724 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 RAVER1Q8IY67 606 aaKnown RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 NANOGP1Q8N7R0 232 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 GPR151Q8TDV0 419 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 BTN2A2Q8WVV5 523 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 MED8Q96G25 268 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 MSLNLQ96KJ4 702 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 FOPNLQ96NB1 174 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 OR4K3Q96R72 315 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 BARHL1Q9BZE3 327 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 B4GALT6Q9UBX8 382 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 GABRQQ9UN88 632 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 CCDC182A6NF36 153 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 FAAHO00519 579 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 SSX4O60224 188 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 ENTPD6O75354 484 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 TRIM3O75382 744 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 CSO75390 466 aaKnown RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 PDE9AO76083 593 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 RB1P06400 928 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 RPL17P18621 184 aaKnown RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 UQCRC2P22695 453 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 MLLT3P42568 568 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 LARS2Q15031 903 aaKnown RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 SLC25A30Q5SVS4 291 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 FAM71E1Q6IPT2 247 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 REEP3Q6NUK4 255 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 CASP12Q6UXS9 341 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 ZNF852Q6ZMS4 543 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 HTR3DQ70Z44 454 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 DNAJB7Q7Z6W7 309 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 RDH10Q8IZV5 341 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 VWA5B2Q8N398 1253 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 TRAM1L1Q8N609 369 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 OR4K1Q8NGD4 311 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 SLC25A46Q96AG3 418 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 DHRS1Q96LJ7 313 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 MED18Q9BUE0 208 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 WRAP53Q9BUR4 548 aaKnown RBP15.55■□□□□ 0.08
SHMT2-231ENST00000557433 FAM83DQ9H4H8 585 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 MARCH7Q9H992 704 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 MUTYHQ9UIF7 546 aa15.55■□□□□ 0.08
SHMT2-231ENST00000557433 IRGMA1A4Y4 181 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 J3KTA2 159 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 ALPPP05187 535 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 POU2F1P14859 743 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 EPHB3P54753 998 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 DSTNP60981 165 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 ALDH6A1Q02252 535 aaKnown RBP15.54■□□□□ 0.08
SHMT2-231ENST00000557433 CHRNEQ04844 493 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 CRHR2Q13324 411 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 SF1Q15637 639 aaKnown RBP15.54■□□□□ 0.08
SHMT2-231ENST00000557433 ZNF79Q15937 498 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms