RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ADAM29Q9UKF5 820 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 DAPP1Q9UN19 280 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 DLGAP4Q9Y2H0 992 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 ATG4BQ9Y4P1 393 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 POLR3HQ9Y535 204 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-227ENST00000557269 A0A088AWK7 358 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 GOLGA8QA0A0J9YX86 632 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 ARHGAP10A1A4S6 786 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 GOLGA8OA6NCC3 632 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 C9J4A7 227 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 GOLGA8NF8WBI6 632 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 EFSO43281 561 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 PCDH7O60245 1069 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 B4GALT2O60909 372 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 CDC123O75794 336 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-227ENST00000557269 BMP10O95393 424 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 ALBP02768 609 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 VIMP08670 466 aaKnown RBP12.09□□□□□ -0.47
SHMT2-227ENST00000557269 RAB40ALP0C0E4 278 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 ZGLP1P0C6A0 271 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 PRR35P0CG20 571 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 PIM1P11309 404 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-227ENST00000557269 ALOX15P16050 662 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-227ENST00000557269 ZNF10P21506 573 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-227ENST00000557269 TACR1P25103 407 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 EPHA3P29320 983 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 TIA1P31483 386 aaKnown RBP eCLIP12.09□□□□□ -0.47
SHMT2-227ENST00000557269 IDH3AP50213 366 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 RAB38P57729 211 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 RPL38P63173 70 aaKnown RBP12.09□□□□□ -0.47
SHMT2-227ENST00000557269 SF3A3Q12874 501 aaKnown RBP eCLIP12.09□□□□□ -0.471e-13■■■□□ 16.4
SHMT2-227ENST00000557269 SPIN4Q56A73 249 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 NIPAL1Q6NVV3 410 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 NOXRED1Q6NXP6 359 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 GALNT18Q6P9A2 607 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 CYP20A1Q6UW02 462 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 EPGNQ6UW88 154 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 LARP4Q71RC2 724 aaKnown RBP eCLIP12.09□□□□□ -0.47
SHMT2-227ENST00000557269 KIRREL3Q8IZU9 778 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 ZNF248Q8NDW4 579 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 RFWD2Q8NHY2 731 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 KCNE4Q8WWG9 221 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 TBC1D20Q96BZ9 403 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 TM4SF18Q96CE8 201 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 FCRL1Q96LA6 429 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 OR52B2Q96RD2 323 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 CCT7Q99832 543 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 EBF4Q9BQW3 602 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 TGIF2Q9GZN2 237 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 CLK4Q9HAZ1 481 aaKnown RBP12.09□□□□□ -0.47
SHMT2-227ENST00000557269 LYRM4Q9HD34 91 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 MKKSQ9NPJ1 570 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-227ENST00000557269 VTI1BQ9UEU0 232 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 GPN3Q9UHW5 284 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-227ENST00000557269 MCM8Q9UJA3 840 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 FARSAQ9Y285 508 aaKnown RBP12.09□□□□□ -0.47
SHMT2-227ENST00000557269 RAXQ9Y2V3 346 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 CEP295Q9C0D2 2601 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 ASPMQ8IZT6 3477 aa12.09□□□□□ -0.47
SHMT2-227ENST00000557269 FRYQ5TBA9 3013 aa12.08□□□□□ -0.47
SHMT2-227ENST00000557269 SEC16AO15027 2179 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 C21orf140B9A014 251 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 SLCO1B7G3V0H7 640 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 KLK10O43240 276 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 PROM1O43490 865 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 RECKO95980 971 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 UMODP07911 640 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 FHP07954 510 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 ANXA4P09525 319 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-227ENST00000557269 RNH1P13489 461 aaKnown RBP12.08□□□□□ -0.48
SHMT2-227ENST00000557269 PTPN4P29074 926 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 EIF2S3P41091 472 aaKnown RBP12.08□□□□□ -0.48
SHMT2-227ENST00000557269 MAPK12P53778 367 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 SEC24CP53992 1094 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 AQP5P55064 265 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 SKP1P63208 163 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 BTG2P78543 158 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 KLC1Q07866 573 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 ATP6AP1LQ52LC2 224 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 PAGE2Q7Z2X7 111 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 GPR180Q86V85 440 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 EFCAB3Q8N7B9 438 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.08□□□□□ -0.48
SHMT2-227ENST00000557269 C16orf78Q8WTQ4 265 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 MIEF2Q96C03 454 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 SLC45A3Q96JT2 553 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 MAELQ96JY0 434 aaKnown RBP12.08□□□□□ -0.48
SHMT2-227ENST00000557269 EGLN2Q96KS0 407 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 PPP3R2Q96LZ3 170 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 C1orf50Q9BV19 199 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 ACTL8Q9H568 366 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 WDR54Q9H977 334 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 GPN2Q9H9Y4 310 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-227ENST00000557269 KCNK13Q9HB14 408 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 NPHS2Q9NP85 383 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 RIC8BQ9NVN3 520 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 BAIAP2L1Q9UHR4 511 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 TCFL5Q9UL49 500 aa12.08□□□□□ -0.48
SHMT2-227ENST00000557269 PTRH2Q9Y3E5 179 aaKnown RBP12.08□□□□□ -0.48
SHMT2-227ENST00000557269 FREM2Q5SZK8 3169 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms