RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TMCO6Q96DC7 493 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 PHF21BQ96EK2 531 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 KLHDC7BQ96G42 594 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 TRIB3Q96RU7 358 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ELF4Q99607 663 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 CCDC32Q9BV29 185 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ADGRE3Q9BY15 652 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 UGT2B28Q9BY64 529 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 PIF1Q9H611 641 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 CCNB1IP1Q9NPC3 277 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 IGSF5Q9NSI5 407 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 GIMAP2Q9UG22 337 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 KCTD3Q9Y597 815 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ZFHX4Q86UP3 3567 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ZZEF1O43149 2961 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 OR5K3A6NET4 321 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ANKRD66B4E2M5 251 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 MEN1O00255 615 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 CTDSP2O14595 271 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 PDPK1O15530 556 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 MRPS14O60783 128 aaKnown RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 CPNE3O75131 537 aaKnown RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ZNF780AO75290 641 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 EEDO75530 441 aaKnown RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 CER1O95813 267 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 FGF1P05230 155 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ANXA6P08133 673 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 GSTM1P09488 218 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 NAT2P11245 290 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 HGFP14210 728 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ITGA2P17301 1181 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 TSPAN8P19075 237 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 SDHBP21912 280 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 IGFALSP35858 605 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 CXCR4P61073 352 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 CTBP1Q13363 440 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 RAPSNQ13702 412 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 GRB7Q14451 532 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 SLC14A2Q15849 920 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 RFX4Q33E94 735 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ARMC12Q5T9G4 340 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 FAM219BQ5XKK7 198 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 PSAPL1Q6NUJ1 521 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 IL27RAQ6UWB1 636 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 NRARPQ7Z6K4 114 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 PIP4P1Q86T03 277 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 DENND6AQ8IWF6 608 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 HS3ST5Q8IZT8 346 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 TP53I13Q8NBR0 393 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 PLA2G15Q8NCC3 412 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 GALNT6Q8NCL4 622 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ZNF540Q8NDQ6 660 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 KBTBD8Q8NFY9 601 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 SETD6Q8TBK2 473 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 BRSK1Q8TDC3 778 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 SLC38A4Q969I6 547 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 SCRN2Q96FV2 425 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ACAT2Q9BWD1 397 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ITPAQ9BY32 194 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 SLC52A3Q9NQ40 469 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 CCDC59Q9P031 241 aaKnown RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 KLF15Q9UIH9 416 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 LEF1Q9UJU2 399 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 POLHQ9Y253 713 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 DNAJC15Q9Y5T4 150 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 HS3ST3A1Q9Y663 406 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ARL5AQ9Y689 179 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 KNTC1P50748 2209 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 A0A1B0GTQ1 180 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 MEIOCA2RUB1 952 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 OR2A25A4D2G3 310 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 MROH6A6NGR9 719 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 K7ESM1 405 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 PIP5K1BO14986 540 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 LZTS3O60299 673 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-216ENST00000552909 SDC3O75056 442 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 RECQL5O94762 991 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-216ENST00000552909 KCNK5O95279 499 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 FTH1P02794 183 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 ELFN1P0C7U0 828 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 ITGAMP11215 1152 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 HNF1BP35680 557 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 ETV6P41212 452 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 HNF4AP41235 474 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 RPS5P46782 204 aaKnown RBP7.34□□□□□ -1.23
LIMA1-216ENST00000552909 SUOXP51687 545 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 PFN3P60673 137 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 POU4F1Q01851 419 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 EMX2Q04743 252 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 RCAN2Q14206 197 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 PTPRCAPQ14761 206 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 IRF4Q15306 451 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 GPAT3Q53EU6 434 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 PAGE3Q5JUK9 113 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 PXDC1Q5TGL8 231 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 FAM122CQ6P4D5 195 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 DBX2Q6ZNG2 339 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 DPPA4Q7L190 304 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 IQCHQ86VS3 1027 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 PHYKPLQ8IUZ5 450 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms