RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 DMRT3Q9NQL9 472 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 ATP6V1HQ9UI12 483 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 CORO2BQ9UQ03 480 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 PRKAB1Q9Y478 270 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 PCYT1BQ9Y5K3 369 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 WNT6Q9Y6F9 365 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 ATG2BQ96BY7 2078 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 LTBP2Q14767 1821 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TRBV4-1A0A0J9YWV2 114 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 KIAA0513O60268 411 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 GPR37L1O60883 481 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 LILRB3O75022 631 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 GADD45GO95257 159 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 GSTT2P0CG29 244 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 GSTT2BP0CG30 244 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 CBLP22681 906 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 CHMP24386 653 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 SERPINB1P30740 379 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 HOXD12P35452 270 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 PIK3CBP42338 1070 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 LIMS1P48059 325 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 PXNP49023 591 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TGM4P49221 684 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 DCDC1P59894 354 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TUBA1BP68363 451 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF33BQ06732 778 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 MESP2Q0VG99 397 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 DMC1Q14565 340 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 IRF3Q14653 427 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TEAD2Q15562 447 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF362Q5T0B9 420 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 ATAD3BQ5T9A4 648 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 MLIPQ5VWP3 458 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 DESI1Q6ICB0 168 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 BRAT1Q6PJG6 821 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 LIPIQ6XZB0 460 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TUBA1AQ71U36 451 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 OLIG3Q7RTU3 272 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 RBM45Q8IUH3 476 aaKnown RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 SLC7A5P1Q8MH63 180 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 METTL4Q8N3J2 472 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 CELF2-AS1Q8N7Q2 184 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 ST13P5Q8NFI4 369 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 GOT1L1Q8NHS2 421 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 IRF7Q92985 503 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 CEP44Q9C0F1 390 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 NXF2Q9GZY0 626 aaKnown RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 OR2AG1Q9H205 316 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 CXorf36Q9H7Y0 433 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 NMNAT1Q9HAN9 279 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 SIAEQ9HAT2 523 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 SLAMF7Q9NQ25 335 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 C14orf119Q9NWQ9 140 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TAS2R9Q9NYW1 312 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 CLEC2DQ9UHP7 191 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 VCANP13611 3396 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 EYSQ5T1H1 3165 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 A0A1W2PRB8 838 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 WASH3PC4AMC7 463 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 AGRPO00253 132 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 ARHGAP33O14559 1287 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 ZW10O43264 779 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 SOD1P00441 154 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 ELFN1P0C7U0 828 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 CKMT1AP12532 417 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 SYN1P17600 705 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 XPAP23025 273 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 NR4A2P43354 598 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 CSNK2BP67870 215 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TAP2Q03519 686 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TLE2Q04725 743 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 FCHO2Q0JRZ9 810 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 SEC23BQ15437 767 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 SSX1Q16384 188 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TRIM60Q495X7 471 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 FAM71E1Q6IPT2 247 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TMEM53Q6P2H8 277 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TNFAIP8L2Q6P589 184 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 PARS2Q7L3T8 475 aaKnown RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 VN1R5Q7Z5H4 357 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 HMGN2P46Q86SG4 172 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 ATCAYQ86WG3 371 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TRAPPC5Q8IUR0 188 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 CELF5Q8N6W0 485 aaKnown RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 AMER2Q8N7J2 671 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 DENND6BQ8NEG7 585 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 WDR36Q8NI36 951 aaKnown RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 VANGL1Q8TAA9 524 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 RAB8BQ92930 207 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 UCN3Q969E3 161 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 VPS35Q96QK1 796 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 SDHCQ99643 169 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 MGLLQ99685 303 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 PIP5K1AQ99755 562 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 EHD1Q9H4M9 534 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF556Q9HAH1 456 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 RC3H2Q9HBD1 1191 aaKnown RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 THSD1Q9NS62 852 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 ERVK13-1Q9NX77 482 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 TAAR2Q9P1P5 351 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms