RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 CELSR2Q9HCU4 2923 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 TEX15Q9BXT5 2789 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 A0A087X1B8 175 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 MYOCOSA0A1B0GUC4 107 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 NPIPA5E9PKD4 350 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 K7EPI3 171 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 RTCAO00442 366 aaKnown RBP15.24■□□□□ 0.03
VPS29-207ENST00000549970 CCL21O00585 134 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 CYR61O00622 381 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 NME2P1O60361 137 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 URI1O94763 535 aaPredicted RBP15.24■□□□□ 0.03
VPS29-207ENST00000549970 MLYCDO95822 493 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 C2P06681 752 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 NME2P22392 152 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 CA7P43166 264 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 RCN2Q14257 317 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 TERF2Q15554 542 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 MED27Q6P2C8 311 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 ZNF793Q6ZN11 406 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 ZNF227Q86WZ6 799 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 CENPLQ8N0S6 344 aaPredicted RBP15.24■□□□□ 0.03
VPS29-207ENST00000549970 ZNF473Q8WTR7 871 aaKnown RBP15.24■□□□□ 0.03
VPS29-207ENST00000549970 UBTD2Q8WUN7 234 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 UBE2E3Q969T4 207 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 NCLNQ969V3 563 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 TMEM125Q96AQ2 219 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 VMP1Q96GC9 406 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 GPR137Q96N19 417 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 MS4A8Q9BY19 250 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 ADAP2Q9NPF8 381 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 SNX15Q9NRS6 342 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 SUCOQ9UBS9 1254 aaKnown RBP15.24■□□□□ 0.03
VPS29-207ENST00000549970 ZNF223Q9UK11 482 aaPredicted RBP15.24■□□□□ 0.03
VPS29-207ENST00000549970 NPIPA1Q9UND3 350 aa15.24■□□□□ 0.03
VPS29-207ENST00000549970 SYCE1LA8MT33 242 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 SAP18O00422 153 aaKnown RBP15.23■□□□□ 0.03
VPS29-207ENST00000549970 CDK2AP1O14519 115 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 SLC19A2O60779 497 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 TGFB1P01137 390 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 IFNA16P05015 189 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 MTHFD2P13995 350 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 EPB42P16452 691 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 TRHRP34981 398 aaPredicted RBP15.23■□□□□ 0.03
VPS29-207ENST00000549970 CASP2P42575 452 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 HLCSP50747 726 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 CASP6P55212 293 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 E2F2Q14209 437 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 FAM83EQ2M2I3 478 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.23■□□□□ 0.03
VPS29-207ENST00000549970 UBAP2Q5T6F2 1119 aaKnown RBP15.23■□□□□ 0.03
VPS29-207ENST00000549970 UBE3DQ7Z6J8 389 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 MYLK4Q86YV6 388 aaPredicted RBP15.23■□□□□ 0.03
VPS29-207ENST00000549970 CPSF7Q8N684 471 aaKnown RBP15.23■□□□□ 0.03
VPS29-207ENST00000549970 SRFBP1Q8NEF9 429 aaKnown RBP15.23■□□□□ 0.03
VPS29-207ENST00000549970 CCDC120Q96HB5 630 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 MAGED4Q96JG8 741 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 MAPKAP1Q9BPZ7 522 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 ROGDIQ9GZN7 287 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 TRIM45Q9H8W5 580 aaPredicted RBP15.23■□□□□ 0.03
VPS29-207ENST00000549970 NINJ2Q9NZG7 142 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 CENPEQ02224 2701 aa15.23■□□□□ 0.03
VPS29-207ENST00000549970 A0A096LPK6 155 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 HMX2A2RU54 273 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 PRKNO60260 465 aaPredicted RBP15.22■□□□□ 0.03
VPS29-207ENST00000549970 CTNSO60931 367 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 ITGA10O75578 1167 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 GFAPP14136 432 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 ZNF24P17028 368 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 ATP5A1P25705 553 aaKnown RBP15.22■□□□□ 0.03
VPS29-207ENST00000549970 PHBP35232 272 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 SSR2P43308 183 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 STX4Q12846 297 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 DDX39BQ13838 428 aaKnown RBP15.22■□□□□ 0.03
VPS29-207ENST00000549970 ELAVL1Q15717 326 aaKnown RBP15.22■□□□□ 0.03
VPS29-207ENST00000549970 C3AR1Q16581 482 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 AP5B1Q2VPB7 878 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 KRTCAP3Q53RY4 240 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 GRHL2Q6ISB3 625 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 SIAH3Q8IW03 269 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 LAS2Q8IYD9 372 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 CYP4Z2PQ8N1L4 340 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 ARMC10Q8N2F6 343 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 TMEM132CQ8N3T6 1108 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 RNF175Q8N4F7 328 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 TMEM156Q8N614 296 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 TEX9Q8N6V9 391 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 ACOT4Q8N9L9 421 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 OR7G3Q8NG95 312 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 RHEBL1Q8TAI7 183 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 SREK1Q8WXA9 508 aaKnown RBP15.22■□□□□ 0.03
VPS29-207ENST00000549970 CCDC77Q9BR77 488 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 TBCDQ9BTW9 1192 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 ALOXE3Q9BYJ1 711 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 LIN28AQ9H9Z2 209 aaKnown RBP15.22■□□□□ 0.03
VPS29-207ENST00000549970 LYRM4Q9HD34 91 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 KCMF1Q9P0J7 381 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 TINAGQ9UJW2 476 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 PPIEQ9UNP9 301 aaKnown RBP15.22■□□□□ 0.03
VPS29-207ENST00000549970 ANGPTL3Q9Y5C1 460 aa15.22■□□□□ 0.03
VPS29-207ENST00000549970 CLCA3PQ9Y6N3 262 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms