RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 KCNMB3Q9NPA1 279 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 C2orf42Q9NWW7 574 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 PLEK2Q9NYT0 353 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 TMEM181Q9P2C4 612 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 ZNF319Q9P2F9 582 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 KLHL8Q9P2G9 620 aaPredicted RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 UBQLN2Q9UHD9 624 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 ERVK-19Q9WJR5 959 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 RPH3AQ9Y2J0 694 aaPredicted RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 CSNK1G3Q9Y6M4 447 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 SPAG9O60271 1321 aaKnown RBP3.53□□□□□ -1.84
VPS29-205ENST00000548539 A0A1B0GVY2 172 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 MACROD2A1Z1Q3 448 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 SLCO1B7G3V0H7 640 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 SEC22BO75396 215 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 ZNF821O75541 412 aaPredicted RBP3.53□□□□□ -1.84
VPS29-205ENST00000548539 PRDM1O75626 825 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 EPOP01588 193 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 LYNP07948 512 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 GSTA2P09210 222 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 ZNF26P17031 533 aaPredicted RBP3.53□□□□□ -1.84
VPS29-205ENST00000548539 AHCYP23526 432 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 HLA-FP30511 346 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 TSFMP43897 325 aaKnown RBP3.53□□□□□ -1.84
VPS29-205ENST00000548539 LUMP51884 338 aaPredicted RBP3.53□□□□□ -1.84
VPS29-205ENST00000548539 CNN1P51911 297 aaKnown RBP3.53□□□□□ -1.84
VPS29-205ENST00000548539 BACE1P56817 501 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 IRX4P78413 519 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 DHODHQ02127 395 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 DRP2Q13474 957 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 C3AR1Q16581 482 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 STX1AQ16623 288 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 SNRNP48Q6IEG0 339 aaKnown RBP3.53□□□□□ -1.84
VPS29-205ENST00000548539 CD164L2Q6UWJ8 174 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 C1orf186Q6ZWK4 172 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 ADAMTSL2Q86TH1 951 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 SLC22A15Q8IZD6 547 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 ELMOD1Q8N336 334 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 ZNF248Q8NDW4 579 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 ZNF519Q8TB69 540 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 GANCQ8TET4 914 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 SLC13A3Q8WWT9 602 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 CNRIP1Q96F85 164 aaPredicted RBP3.53□□□□□ -1.84
VPS29-205ENST00000548539 CCM2Q9BSQ5 444 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 HOXD1Q9GZZ0 328 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 DDX47Q9H0S4 455 aaKnown RBP3.53□□□□□ -1.84
VPS29-205ENST00000548539 DPEP3Q9H4B8 488 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 PIGVQ9NUD9 493 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 BAIAP2L1Q9UHR4 511 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 LNPEPQ9UIQ6 1025 aa3.53□□□□□ -1.84
VPS29-205ENST00000548539 RNF123Q5XPI4 1314 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 ATP6AP2A0A1C7CYW4 349 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 SLC9B1P1A6NJY1 282 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 A8MU76 341 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 TCP10L2B9ZVM9 353 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 NPIPB9F8W1W9 429 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 NR5A2O00482 541 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 OGTO15294 1046 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 P2RX6O15547 441 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 CPNE6O95741 557 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 ALPPP05187 535 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 ALPPL2P10696 532 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 PCP11498 1178 aaKnown RBP3.52□□□□□ -1.85
VPS29-205ENST00000548539 ANPEPP15144 967 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 PRKACGP22612 351 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 HNRNPFP52597 415 aaKnown RBP3.52□□□□□ -1.85
VPS29-205ENST00000548539 BPIFB3P59826 476 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 HERV-K104P63124 156 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 IL1RL1Q01638 556 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 HEPACAMQ14CZ8 416 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 WSCD2Q2TBF2 565 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 PARP10Q53GL7 1025 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 PLPP4Q5VZY2 271 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 NLRP14Q86W24 1093 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 BATF2Q8N1L9 274 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 SIDT2Q8NBJ9 832 aaKnown RBP3.52□□□□□ -1.85
VPS29-205ENST00000548539 TMEM185AQ8NFB2 350 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 KIAA1524Q8TCG1 905 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 TAF15Q92804 592 aaKnown RBP eCLIP3.52□□□□□ -1.85
VPS29-205ENST00000548539 GLYATL1Q969I3 302 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 MRPL53Q96EL3 112 aaKnown RBP3.52□□□□□ -1.85
VPS29-205ENST00000548539 PCED1BQ96HM7 432 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 CDHR1Q96JP9 859 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 ART5Q96L15 291 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 LURAP1Q96LR2 239 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 SSX3Q99909 188 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 AGPAT1Q99943 283 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 SYT15Q9BQS2 421 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 ZNF577Q9BSK1 485 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 PAPOLGQ9BWT3 736 aaKnown RBP3.52□□□□□ -1.85
VPS29-205ENST00000548539 S100A14Q9HCY8 104 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 DDX28Q9NUL7 540 aaKnown RBP3.52□□□□□ -1.85
VPS29-205ENST00000548539 MIS18AQ9NYP9 233 aa3.52□□□□□ -1.85
VPS29-205ENST00000548539 TRBV2A0A0J9YWF9 115 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 SH3PXD2BA1X283 911 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 NKX6-3A6NJ46 265 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 TLX2O43763 284 aaPredicted RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 ZG16O60844 167 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 STAM2O75886 525 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 IGLV1-44P01699 117 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms