RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 GABRA1P14867 456 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 ENDOUP21128 410 aaKnown RBP11.79□□□□□ -0.52
SCAF11-208ENST00000546534 BMP5P22003 454 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 TACR1P25103 407 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 PCSK6P29122 969 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 DNASE1L1P49184 302 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 ASCL1P50553 236 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 DCAF7P61962 342 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 NKX6-1P78426 367 aaPredicted RBP11.79□□□□□ -0.52
SCAF11-208ENST00000546534 CTBP1Q13363 440 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 HSPB2Q16082 182 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 HYAL4Q2M3T9 481 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 CATSPEREQ5SY80 951 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 FAM47EQ6ZV65 393 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 CXXC5Q7LFL8 322 aaKnown RBP11.79□□□□□ -0.52
SCAF11-208ENST00000546534 STRA8Q7Z7C7 330 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 SCUBE1Q8IWY4 988 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 CA13Q8N1Q1 262 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 NAXEQ8NCW5 288 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 LRRN4CLQ8ND94 238 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 EEF1AKMT1Q8WVE0 214 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 PYCR2Q96C36 320 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 SNF8Q96H20 258 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 HES6Q96HZ4 224 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 SCYL1Q96KG9 808 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 CDK15Q96Q40 435 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 HAUS8Q9BT25 410 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 KLHL31Q9H511 634 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 EXO5Q9H790 373 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 SEMA4BQ9NPR2 832 aaPredicted RBP11.79□□□□□ -0.52
SCAF11-208ENST00000546534 TRMT1Q9NXH9 659 aaKnown RBP11.79□□□□□ -0.52
SCAF11-208ENST00000546534 SPRR3Q9UBC9 169 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 MMACHCQ9Y4U1 282 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 CLDN16Q9Y5I7 305 aa11.79□□□□□ -0.52
SCAF11-208ENST00000546534 TRGV5A0A0B4J1U4 118 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 TCRBV7S3A2A0A539 114 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 HCN1O60741 890 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 AVILO75366 819 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 IPO7O95373 1038 aaKnown RBP11.78□□□□□ -0.52
SCAF11-208ENST00000546534 SMIM10L1P0DMW3 83 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 EPXP11678 715 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 CD53P19397 219 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 SCTRP47872 440 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 PCBP2Q15366 365 aaKnown RBP eCLIP11.78□□□□□ -0.52
SCAF11-208ENST00000546534 PHKG1Q16816 387 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 FBXL19-AS1Q494R0 122 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 SHEQ5VZ18 495 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 RTL4Q6ZR62 310 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 ULK2Q8IYT8 1036 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 SYCE1Q8N0S2 351 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 TBC1D19Q8N5T2 526 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 ANKRD53Q8N9V6 530 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 LRRC46Q96FV0 321 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 SMIM10Q96HG1 83 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 OR4K3Q96R72 315 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 TSGA10Q9BZW7 698 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 ALG2Q9H553 416 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 PARVBQ9HBI1 364 aa11.78□□□□□ -0.52
SCAF11-208ENST00000546534 BEX4Q9NWD9 120 aaPredicted RBP11.78□□□□□ -0.52
SCAF11-208ENST00000546534 TUBA8Q9NY65 449 aaPredicted RBP11.78□□□□□ -0.52
SCAF11-208ENST00000546534 URADA6NGE7 173 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 TUBAL3A6NHL2 446 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 EIF3FO00303 357 aaPredicted RBP11.77□□□□□ -0.53
SCAF11-208ENST00000546534 DVL2O14641 736 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 ZNF354AO60765 605 aaPredicted RBP11.77□□□□□ -0.53
SCAF11-208ENST00000546534 C8GP07360 202 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 CCL3P10147 92 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 PAMP19021 973 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 AHRP35869 848 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 HNRNPFP52597 415 aaKnown RBP11.77□□□□□ -0.53
SCAF11-208ENST00000546534 HK2P52789 917 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 WNT3P56703 355 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 DHX9Q08211 1270 aaKnown RBP11.77□□□□□ -0.53
SCAF11-208ENST00000546534 THOC5Q13769 683 aaKnown RBP11.77□□□□□ -0.53
SCAF11-208ENST00000546534 RUNX2Q13950 521 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 KCTD19Q17RG1 926 aaPredicted RBP11.77□□□□□ -0.53
SCAF11-208ENST00000546534 POMZP3Q6PJE2 187 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 RAD9BQ6WBX8 426 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 HSDL2Q6YN16 418 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 SLC13A5Q86YT5 568 aaPredicted RBP11.77□□□□□ -0.53
SCAF11-208ENST00000546534 CIARTQ8N365 385 aaPredicted RBP11.77□□□□□ -0.53
SCAF11-208ENST00000546534 GOLM1Q8NBJ4 401 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 TMEM52Q8NDY8 209 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 TNIP2Q8NFZ5 429 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 LINC01560Q8TB33 94 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 COX4I2Q96KJ9 171 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 CAPZA3Q96KX2 299 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 AICDAQ9GZX7 198 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 PRTFDC1Q9NRG1 225 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 SACM1LQ9NTJ5 587 aa11.77□□□□□ -0.53
SCAF11-208ENST00000546534 MTRF1LQ9UGC7 380 aaKnown RBP11.77□□□□□ -0.53
SCAF11-208ENST00000546534 FOXD3Q9UJU5 478 aaPredicted RBP11.77□□□□□ -0.53
SCAF11-208ENST00000546534 MYOCOSA0A1B0GUC4 107 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 KDM4EB2RXH2 506 aaPredicted RBP11.76□□□□□ -0.53
SCAF11-208ENST00000546534 HAUS5O94927 633 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 P04436 131 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 RFPL3SP0C7P2 107 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 CEACAM8P31997 349 aaPredicted RBP11.76□□□□□ -0.53
SCAF11-208ENST00000546534 PIGAP37287 484 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 SLC1A2P43004 574 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms