RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 RBPMSQ93062 196 aaKnown RBP8.56□□□□□ -1.04
VPS13D-212ENST00000543766 BIRC7Q96CA5 298 aa8.56□□□□□ -1.04
VPS13D-212ENST00000543766 C16orf58Q96GQ5 468 aa8.56□□□□□ -1.04
VPS13D-212ENST00000543766 IKZF4Q9H2S9 585 aa8.56□□□□□ -1.04
VPS13D-212ENST00000543766 LRRN3Q9H3W5 708 aa8.56□□□□□ -1.04
VPS13D-212ENST00000543766 TLR9Q9NR96 1032 aa8.56□□□□□ -1.04
VPS13D-212ENST00000543766 GLS2Q9UI32 602 aa8.56□□□□□ -1.04
VPS13D-212ENST00000543766 RAB26Q9ULW5 256 aa8.56□□□□□ -1.04
VPS13D-212ENST00000543766 OR14I1A6ND48 311 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 M0R036 132 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 NR5A2O00482 541 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SLC16A3O15427 465 aaKnown RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 CHP2O43745 196 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 RPP40O75818 363 aaKnown RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 VNN2O95498 520 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 NDST3O95803 873 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 CALCBP10092 127 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 NME1P15531 152 aaKnown RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 ZNF23P17027 643 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 HSD11B1P28845 292 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SLC6A6P31641 620 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 RPA3P35244 121 aaPredicted RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 RAP1GAPP47736 663 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 GMPSP49915 693 aaPredicted RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SLC10A7Q0GE19 358 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 C6orf52Q5T4I8 152 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 AADACL2Q6P093 401 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 PPM1KQ8N3J5 372 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 LIX1Q8N485 282 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 FAM89BQ8N5H3 189 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 OR5T2Q8NGG2 359 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SHKBP1Q8TBC3 707 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 FAM46BQ96A09 425 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 GAL3ST3Q96A11 431 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 ZNF641Q96N77 438 aaPredicted RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 ZNF347Q96SE7 839 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 ITPAQ9BY32 194 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 CLEC4MQ9H2X3 399 aaPredicted RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SLC17A7Q9P2U7 560 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 AJAP1Q9UKB5 411 aaPredicted RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 ABT1Q9ULW3 272 aaKnown RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 NRXN2Q9P2S2 1712 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 A0A0A6YYC8 382 aaPredicted RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 A0A0G2JN53 185 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 I3L1I5 382 aaPredicted RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SLC16A4O15374 487 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 ADAM20O43506 726 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SDC3O75056 442 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SLC43A1O75387 559 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 PAK4O96013 591 aaPredicted RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SPNP16150 400 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 GABRB3P28472 473 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 MC3RP41968 323 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SMSP52788 366 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 CTSWP56202 376 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 DEFA1P59665 94 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 DEFA3P59666 94 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 BLOC1S1P78537 153 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 NHLH2Q02577 135 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 GPR17Q13304 367 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 C11orf63Q6NUN7 778 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SCML4Q8N228 414 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 GLIS3Q8NEA6 775 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 CCDC54Q8NEL0 328 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 C17orf47Q8NEP4 570 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 OR10A7Q8NGE5 316 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 WDR36Q8NI36 951 aaKnown RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 NSMAFQ92636 917 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 CDS1Q92903 461 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 COPS5Q92905 334 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 TMEM143Q96AN5 459 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 TADA1Q96BN2 335 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 ECHDC3Q96DC8 303 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 LRRC46Q96FV0 321 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 KLHL5Q96PQ7 755 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 OR2AG1Q9H205 316 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 MAN2C1Q9NTJ4 1040 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 KCNK1O00180 336 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SCDO00767 359 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SIGLEC6O43699 453 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 PTGER2P43116 358 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 BAG6P46379 1132 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 GALCP54803 685 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SNTB1Q13884 538 aaKnown RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 SNAPC1Q16533 368 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 ZBTB37Q5TC79 503 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 ZNF546Q86UE3 836 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 CCDC105Q8IYK2 499 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 TM9SF4Q92544 642 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 HAS2Q92819 552 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 PEX11GQ96HA9 241 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 EBNA1BP2Q99848 306 aaKnown RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 CCNB1IP1Q9NPC3 277 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 FBXO6Q9NRD1 293 aaPredicted RBP8.55□□□□□ -1.04
VPS13D-212ENST00000543766 U3KQV3 271 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 BTAF1O14981 1849 aa8.55□□□□□ -1.04
VPS13D-212ENST00000543766 MEIS1O00470 390 aa8.54□□□□□ -1.04
VPS13D-212ENST00000543766 HPGDSO60760 199 aa8.54□□□□□ -1.04
VPS13D-212ENST00000543766 AKAP3O75969 853 aa8.54□□□□□ -1.04
VPS13D-212ENST00000543766 SRPRAP08240 638 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms