RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 IL1RL2Q9HB29 575 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 SH2D2AQ9NP31 389 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 PNO1Q9NRX1 252 aaKnown RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 GALNT8Q9NY28 637 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 TUBA8Q9NY65 449 aaPredicted RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 UTP6Q9NYH9 597 aaKnown RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 SAMD15Q9P1V8 674 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 WHRNQ9P202 907 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 MAPRE3Q9UPY8 281 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 CAMK2AQ9UQM7 478 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 R3HDM2Q9Y2K5 976 aaKnown RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 YARS2Q9Y2Z4 477 aaKnown RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 NAALAD2Q9Y3Q0 740 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 FREM3P0C091 2139 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 ANK2Q01484 3957 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 HEATR5BQ9P2D3 2071 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 TRBV5-4A0A0C4DH59 114 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 IGKV1-8A0A0C4DH67 115 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 SAGE2PA6NJ88 616 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 C3orf70A6NLC5 250 aaPredicted RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 AHRRA9YTQ3 701 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 H7BY64 318 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 TBX1O43435 398 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 CBFA2T2O43439 604 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 PRKNO60260 465 aaPredicted RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 HCN1O60741 890 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 DEAF1O75398 565 aaPredicted RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 ANXA9O76027 345 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 MYO1DO94832 1006 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 GLSO94925 669 aaPredicted RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 KRT1P04264 644 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 SERPIND1P05546 499 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 FHP07954 510 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 CYC1P08574 325 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 RFPL3SP0C7P2 107 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 TMIGD3P0DMS9 266 aaPredicted RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 EZRP15311 586 aaKnown RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 ZFXP17010 805 aaPredicted RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 EGR1P18146 543 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 ENDOUP21128 410 aaKnown RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 MSNP26038 577 aaKnown RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 OPRM1P35372 400 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 IDUAP35475 653 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 TIMP3P35625 211 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 ACVR1BP36896 505 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 PIGAP37287 484 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 SOX3P41225 446 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF140P52738 457 aaPredicted RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 MPP1Q00013 466 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 DEFA6Q01524 100 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 FOXF2Q12947 444 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 PRPSAP1Q14558 356 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 POU6F1Q14863 301 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 NAA25Q14CX7 972 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 TMED2Q15363 201 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 ACSF3Q4G176 576 aaPredicted RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 XKR6Q5GH73 641 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 UBAP2Q5T6F2 1119 aaKnown RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 LIPNQ5VXI9 398 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 ICE2Q659A1 982 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 KCTD11Q693B1 232 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 ANKRD34AQ69YU3 496 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 SLC9A4Q6AI14 798 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 HIST2H2BDQ6DRA6 164 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 PLXDC2Q6UX71 529 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 SLC26A11Q86WA9 606 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 PDSS2Q86YH6 399 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 LACC1Q8IV20 430 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF441Q8N8Z8 693 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 NFAM1Q8NET5 270 aaPredicted RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 LKAAEAR1Q8TD35 194 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 SYN2Q92777 582 aaPredicted RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 HSPBAP1Q96EW2 488 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 CDKN2AIPNLQ96HQ2 116 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 FOPNLQ96NB1 174 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 PRAP1Q96NZ9 151 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 OLFM3Q96PB7 478 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 FAM111AQ96PZ2 611 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 TTC1Q99614 292 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 SYT11Q9BT88 431 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 MED18Q9BUE0 208 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 TSSK1BQ9BXA7 367 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 ISCUQ9H1K1 167 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 CXorf56Q9H5V9 222 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 LANCL2Q9NS86 450 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 HOMER3Q9NSC5 361 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 SACM1LQ9NTJ5 587 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 NLE1Q9NVX2 485 aaPredicted RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 PIH1D1Q9NWS0 290 aaKnown RBP4.39□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF226Q9NYT6 803 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 CTTNBP2NLQ9P2B4 639 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 TAC3Q9UHF0 121 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 LAMP3Q9UQV4 416 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 KLK4Q9Y5K2 254 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 WIF1Q9Y5W5 379 aa4.39□□□□□ -1.71
LIMS1-214ENST00000542845 MYOCOSA0A1B0GUC4 107 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 DEFB108AA8MXU0 73 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 SHISA8B8ZZ34 492 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 F8W8V4 182 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 H7C0C1 242 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms