RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 KDM4EB2RXH2 506 aaPredicted RBP8.41□□□□□ -1.06
USP28-205ENST00000537706 GPRIN2O60269 458 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 ADAM11O75078 769 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 TRAPPC6AO75865 159 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 PROSCO94903 275 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 RCBTB2O95199 551 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 AOAHP28039 575 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 GRK3P35626 688 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 BMPR2Q13873 1038 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 SPA17Q15506 151 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 BBS9Q3SYG4 887 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 PRR31Q5SQ13 230 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 FAM166AQ6J272 317 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 HSDL2Q6YN16 418 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 SH2D5Q6ZV89 423 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 ZNF571Q7Z3V5 609 aaPredicted RBP8.41□□□□□ -1.06
USP28-205ENST00000537706 TXLNBQ8N3L3 684 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.41□□□□□ -1.06
USP28-205ENST00000537706 GPATCH11Q8N954 259 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 C9orf106Q8NAJ2 232 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 SLC13A3Q8WWT9 602 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 CAVIN3Q969G5 261 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 REPS1Q96D71 796 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 CCDC42Q96M95 316 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 SYNPO2LQ9H987 977 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 ABCF3Q9NUQ8 709 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 ELOVL5Q9NYP7 299 aa8.41□□□□□ -1.06
USP28-205ENST00000537706 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.41□□□□□ -1.06
USP28-205ENST00000537706 V9GYY5 206 aaPredicted RBP8.41□□□□□ -1.06
USP28-205ENST00000537706 ZNF407Q9C0G0 2248 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 C16orf97H3BN30 126 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 SMAPO00193 183 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 KIAA0513O60268 411 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 SMNDC1O75940 238 aaKnown RBP eCLIP8.4□□□□□ -1.06
USP28-205ENST00000537706 CYP1A2P05177 515 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 FESP07332 822 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 CCL3P10147 92 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 PYGBP11216 843 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 POU2F1P14859 743 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 ZNF16P17020 682 aaPredicted RBP8.4□□□□□ -1.06
USP28-205ENST00000537706 ITGA2P17301 1181 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 MAOAP21397 527 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 ADRA1AP35348 466 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 PIGAP37287 484 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 KCNJ5P48544 419 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 GZMKP49863 264 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 PNLIPRP1P54315 467 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 TAS2R40P59535 323 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 BTG2P78543 158 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 LOXL1Q08397 574 aaPredicted RBP8.4□□□□□ -1.06
USP28-205ENST00000537706 FAM27E3Q08E93 113 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 CCSMST1Q4G0I0 132 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 MIDNQ504T8 468 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 XKR6Q5GH73 641 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 PTRHD1Q6GMV3 140 aaKnown RBP8.4□□□□□ -1.06
USP28-205ENST00000537706 LRRC25Q8N386 305 aaPredicted RBP8.4□□□□□ -1.06
USP28-205ENST00000537706 TMEM132CQ8N3T6 1108 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 ZPLD1Q8TCW7 415 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 ZFAND2BQ8WV99 257 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 INTS12Q96CB8 462 aaKnown RBP8.4□□□□□ -1.06
USP28-205ENST00000537706 KRT12Q99456 494 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 LIN28AQ9H9Z2 209 aaKnown RBP8.4□□□□□ -1.06
USP28-205ENST00000537706 SEMA4BQ9NPR2 832 aaPredicted RBP8.4□□□□□ -1.06
USP28-205ENST00000537706 PPIEQ9UNP9 301 aaKnown RBP8.4□□□□□ -1.06
USP28-205ENST00000537706 MMACHCQ9Y4U1 282 aa8.4□□□□□ -1.06
USP28-205ENST00000537706 HRNRQ86YZ3 2850 aaPredicted RBP8.4□□□□□ -1.07
USP28-205ENST00000537706 HACD1B0YJ81 288 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 H7BY64 318 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 OR1I1O60431 355 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 STK10O94804 968 aaKnown RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 KRT1P04264 644 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 SERPING1P05155 500 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 ERGP11308 486 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 RNH1P13489 461 aaKnown RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 GPR143P51810 404 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 WHAMMP3Q1A5X7 153 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 ERCC6LQ2NKX8 1250 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 AARS2Q5JTZ9 985 aaKnown RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 FAM120AOSQ5T036 256 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 CLEC2AQ6UVW9 174 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 VN1R4Q7Z5H5 301 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 PDSS2Q86YH6 399 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 PLD6Q8N2A8 252 aaKnown RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 OR5T3Q8NGG3 340 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 P3H4Q92791 437 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 ZNF597Q96LX8 424 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 PRAP1Q96NZ9 151 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 CHODLQ9H9P2 273 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 SAE1Q9UBE0 346 aaPredicted RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 ANAPC5Q9UJX4 755 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 GUCA1BQ9UMX6 200 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 DSCAMO60469 2012 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 ARHGAP21Q5T5U3 1957 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 IGKV3D-11A0A0A0MRZ8 115 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 AKR1B10O60218 316 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 GALR3O60755 368 aaPredicted RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 ALX3O95076 343 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 CATP04040 527 aaKnown RBP8.39□□□□□ -1.07
USP28-205ENST00000537706 RFPL3SP0C7P2 107 aa8.39□□□□□ -1.07
USP28-205ENST00000537706 H2AFXP16104 143 aaPredicted RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms