RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 FCRL1Q96LA6 429 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 DPYSL5Q9BPU6 564 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 EFHD1Q9BUP0 239 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 SLC39A1Q9NY26 324 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 VAPAQ9P0L0 249 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 SH2B3Q9UQQ2 575 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 DYRK1BQ9Y463 629 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 SNX13Q9Y5W8 968 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 MDC1Q14676 2089 aaKnown RBP11.37□□□□□ -0.59
CLIP1-208ENST00000537004 MN1Q10571 1320 aaPredicted RBP11.37□□□□□ -0.59
CLIP1-208ENST00000537004 EFSO43281 561 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 HSD3B1P14060 373 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 HSD3B2P26439 372 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 HTR1EP28566 365 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 MLLT3P42568 568 aaPredicted RBP11.37□□□□□ -0.59
CLIP1-208ENST00000537004 PNLIPRP1P54315 467 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 ARHGAP40Q5TG30 622 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 IRAK1BP1Q5VVH5 260 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 ADNP2Q6IQ32 1131 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 ICA1LQ8NDH6 482 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 ADCY4Q8NFM4 1077 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 OR7G3Q8NG95 312 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 OR5AR1Q8NGP9 310 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 LRTOMTQ8WZ04 291 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 TESCQ96BS2 214 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 EGLN2Q96KS0 407 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 EBPLQ9BY08 206 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 PIF1Q9H611 641 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 BRF2Q9HAW0 419 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 USP22Q9UPT9 525 aa11.37□□□□□ -0.59
CLIP1-208ENST00000537004 DHRS12A0PJE2 317 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 MAGEB17A8MXT2 336 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 LRATO95237 230 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 C9P02748 559 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 PCNAP12004 261 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 NCK1P16333 377 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 S100A3P33764 101 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 SOX11P35716 441 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 OR4D2P58180 307 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 PHC1P78364 1004 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 KLC1Q07866 573 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 BLMHQ13867 455 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 FXNQ16595 210 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 CATSPEREQ5SY80 951 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 MED27Q6P2C8 311 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 DNAJC14Q6Y2X3 702 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 VASH2Q86V25 355 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 TICAM1Q8IUC6 712 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 DCUN1D3Q8IWE4 304 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 RIMKLAQ8IXN7 391 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 GOLM1Q8NBJ4 401 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 HUS1BQ8NHY5 278 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 RNF217Q8TC41 542 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 TFGQ92734 400 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 RAD51AP1Q96B01 352 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 WDR34Q96EX3 536 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 BBC3Q96PG8 261 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 TAAR9Q96RI9 348 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 DPH1Q9BZG8 443 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 EPB41L1Q9H4G0 881 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 PRORYQ9H606 182 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 CCDC177Q9NQR7 707 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 CCM2LQ9NUG4 571 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 ARMC1Q9NVT9 282 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 PPT2Q9UMR5 302 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 IGHV5-51A0A0C4DH38 117 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 OR6C74A6NCV1 312 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 EIF4E1BA6NMX2 242 aaKnown RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 TIPRLO75663 272 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 ETHE1O95571 254 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 UQCRBP14927 111 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 PSMA4P25789 261 aaKnown RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 ACSM2AQ08AH3 577 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 KRT33BQ14525 404 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 PGS1Q32NB8 556 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 ATG9BQ674R7 924 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 ACSM2BQ68CK6 577 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 MSRB3Q8IXL7 192 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 RBM12BQ8IXT5 1001 aaKnown RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 OR4E2Q8NGC2 313 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 FAM110BQ8TC76 370 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 GFM2Q969S9 779 aaKnown RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 REPS1Q96D71 796 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 METTL2AQ96IZ6 378 aaKnown RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 IL17FQ96PD4 163 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 EFCAB11Q9BUY7 163 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 SEMA6AQ9H2E6 1030 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 KIR3DX1Q9H7L2 352 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 PRM3Q9NNZ6 103 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 HRASLS2Q9NWW9 162 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 SLC25A37Q9NYZ2 338 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 ACSL6Q9UKU0 697 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 PLAGL1Q9UM63 463 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 AURKCQ9UQB9 309 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 RUVBL1Q9Y265 456 aaKnown RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 TDRKHQ9Y2W6 561 aaKnown RBP11.36□□□□□ -0.59
CLIP1-208ENST00000537004 PCDHB3Q9Y5E6 796 aa11.36□□□□□ -0.59
CLIP1-208ENST00000537004 TEX51A0A1B0GUA7 166 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 RPN2P04844 631 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms