RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 MLXIPLQ9NP71 852 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 NMRK1Q9NWW6 199 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 VPS29Q9UBQ0 182 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.64□□□□□ -0.23
CPSF1-206ENST00000531480 TRAF6Q9Y4K3 522 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 HS3ST3B1Q9Y662 390 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 LOC102723996A0A087X1L8 192 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 IGKV3D-11A0A0A0MRZ8 115 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 WDR91A4D1P6 747 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 SAP18O00422 153 aaKnown RBP13.63□□□□□ -0.23
CPSF1-206ENST00000531480 SOCS6O14544 535 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 ITM2AO43736 263 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 SNNO75324 88 aaPredicted RBP13.63□□□□□ -0.23
CPSF1-206ENST00000531480 SH3BGRLO75368 114 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 EEDO75530 441 aaKnown RBP13.63□□□□□ -0.23
CPSF1-206ENST00000531480 JRKO75564 520 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 ITGB2P05107 769 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 BGNP21810 368 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 TPP2P29144 1249 aaPredicted RBP13.63□□□□□ -0.23
CPSF1-206ENST00000531480 MDH1P40925 334 aaKnown RBP13.63□□□□□ -0.23
CPSF1-206ENST00000531480 SSR2P43308 183 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 RAP1GDS1P52306 607 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 CXADRP78310 365 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 OLR1P78380 273 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 ERV3-1Q14264 604 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 SGO1Q5FBB7 561 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 CLEC6AQ6EIG7 209 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 GALNT18Q6P9A2 607 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 QSOX2Q6ZRP7 698 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 MRGPREQ86SM8 312 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 NUDT13Q86X67 352 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 RAB43Q86YS6 212 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 SCUBE1Q8IWY4 988 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 PEX11GQ96HA9 241 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 HBEGFQ99075 208 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 CRB3Q9BUF7 120 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 SORBS1Q9BX66 1292 aaKnown RBP13.63□□□□□ -0.23
CPSF1-206ENST00000531480 MRPL1Q9BYD6 325 aaKnown RBP13.63□□□□□ -0.23
CPSF1-206ENST00000531480 SHCBP1LQ9BZQ2 653 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 COPS7BQ9H9Q2 264 aaPredicted RBP13.63□□□□□ -0.23
CPSF1-206ENST00000531480 MS4A12Q9NXJ0 267 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 AHSPQ9NZD4 102 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 ZDHHC2Q9UIJ5 367 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 C3orf18Q9UK00 162 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 ADAM21Q9UKJ8 722 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 SLC12A4Q9UP95 1085 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 ASB4Q9Y574 426 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 CLDN16Q9Y5I7 305 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 MED13Q9UHV7 2174 aa13.63□□□□□ -0.23
CPSF1-206ENST00000531480 BLACEA4D250 179 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 RRP9O43818 475 aaKnown RBP13.62□□□□□ -0.23
CPSF1-206ENST00000531480 TMPRSS11DO60235 418 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 RSL1D1O76021 490 aaKnown RBP13.62□□□□□ -0.23
CPSF1-206ENST00000531480 CHN1P15882 459 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 JAK1P23458 1154 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 SERPINB3P29508 390 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 SLC1A6P48664 564 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 EMP2P54851 167 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 BST1Q10588 318 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 STX3Q13277 289 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 SOWAHCQ53LP3 525 aaPredicted RBP13.62□□□□□ -0.23
CPSF1-206ENST00000531480 ATP1A1-AS1Q5TC04 95 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 KIRREL2Q6UWL6 708 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 SHISA6Q6ZSJ9 500 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 Q6ZSR9 355 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 PAGE2Q7Z2X7 111 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 COMMD6Q7Z4G1 85 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 APLFQ8IW19 511 aaPredicted RBP13.62□□□□□ -0.23
CPSF1-206ENST00000531480 KIRREL3Q8IZU9 778 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 BBC3Q96PG8 261 aaPredicted RBP13.62□□□□□ -0.23
CPSF1-206ENST00000531480 MAPKAP1Q9BPZ7 522 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 ZNF395Q9H8N7 513 aaPredicted RBP13.62□□□□□ -0.23
CPSF1-206ENST00000531480 PRDM9Q9NQV7 894 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 LYARQ9NX58 379 aaKnown RBP13.62□□□□□ -0.23
CPSF1-206ENST00000531480 MKL2Q9ULH7 1088 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 POLHQ9Y253 713 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 RAP2CQ9Y3L5 183 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 MMACHCQ9Y4U1 282 aa13.62□□□□□ -0.23
CPSF1-206ENST00000531480 CDC14CA4D256 554 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 TMEM233B4DJY2 109 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 PROM1O43490 865 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 ALOX12BO75342 701 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 LYPLA1O75608 230 aaPredicted RBP13.61□□□□□ -0.23
CPSF1-206ENST00000531480 HNRNPH2P55795 449 aaKnown RBP13.61□□□□□ -0.23
CPSF1-206ENST00000531480 HSD17B7P56937 341 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 TRA2BP62995 288 aaKnown RBP13.61□□□□□ -0.23
CPSF1-206ENST00000531480 RAE1P78406 368 aaKnown RBP13.61□□□□□ -0.23
CPSF1-206ENST00000531480 HMGCS1Q01581 520 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 OCRLQ01968 901 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 SLAMF1Q13291 335 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 KIAA0040Q15053 153 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 SPIN4Q56A73 249 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 XKR7Q5GH72 579 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 SH2D4BQ5SQS7 431 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 GPR155Q7Z3F1 870 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 ZNF595Q8IYB9 648 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 TMEM52Q8NDY8 209 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 PPP1R14CQ8TAE6 165 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 TWIST2Q8WVJ9 160 aa13.61□□□□□ -0.23
CPSF1-206ENST00000531480 FCRL1Q96LA6 429 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms