RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 FAM221AA4D161 298 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 LRIT2A6NDA9 550 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 FCHO1O14526 889 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 TP73O15350 636 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 GDF5P43026 501 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 HK2P52789 917 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 PPIAP62937 165 aaKnown RBP13.23□□□□□ -0.29
CPSF1-201ENST00000526271 BTN3A2P78410 334 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 CSHL1Q14406 222 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 TERF2Q15554 542 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 WHAMMP3Q1A5X7 153 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 ARHGAP11AQ6P4F7 1023 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 CCDC137Q6PK04 289 aaKnown RBP13.23□□□□□ -0.29
CPSF1-201ENST00000526271 SLCO4C1Q6ZQN7 724 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 CLNKQ7Z7G1 428 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 GALNT7Q86SF2 657 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 TMEM156Q8N614 296 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 TMEM251Q8N6I4 163 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 FAM47BQ8NA70 645 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 PTPMT1Q8WUK0 201 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-201ENST00000526271 ANKRD49Q8WVL7 239 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 VMP1Q96GC9 406 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 PDLIM5Q96HC4 596 aaKnown RBP13.23□□□□□ -0.29
CPSF1-201ENST00000526271 SCYL1Q96KG9 808 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 TTYH2Q9BSA4 534 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 CNPPD1Q9BV87 410 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 GSX1Q9H4S2 264 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-201ENST00000526271 CLK4Q9HAZ1 481 aaKnown RBP13.23□□□□□ -0.29
CPSF1-201ENST00000526271 KCNJ16Q9NPI9 418 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 KCNN3Q9UGI6 736 aa13.23□□□□□ -0.29
CPSF1-201ENST00000526271 A0A1B0GVC2 190 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 NPEPPSL1A6NEC2 478 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 CCDC188H7C350 402 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 WWP2O00308 870 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 WISP3O95389 354 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-201ENST00000526271 CD1EP15812 388 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 ZNF37AP17032 561 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-201ENST00000526271 CD22P20273 847 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 CERS1P27544 350 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 MAGEA5P43359 124 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 SLC6A12P48065 614 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 DNASE1L1P49184 302 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 SSR4P51571 173 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 RAB38P57729 211 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 IL2P60568 153 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 RBBP5Q15291 538 aaKnown RBP13.22□□□□□ -0.29
CPSF1-201ENST00000526271 ADPRMQ3LIE5 342 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 HP1BP3Q5SSJ5 553 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-201ENST00000526271 TMEM211Q6ICI0 200 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 LYPD8Q6UX82 237 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 IL20RBQ6UXL0 311 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 TRILQ7L0X0 811 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 UBE3DQ7Z6J8 389 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 KLHDC8AQ8IYD2 350 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 SPATA4Q8NEY3 305 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 SLCO2A1Q92959 643 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 CERS2Q96G23 380 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 ZNF559Q9BR84 538 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 MCMBPQ9BTE3 642 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 PROK2Q9HC23 129 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 SH2D2AQ9NP31 389 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 PRTFDC1Q9NRG1 225 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 CCM2LQ9NUG4 571 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-201ENST00000526271 TUBA8Q9NY65 449 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-201ENST00000526271 SPRR3Q9UBC9 169 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 MYOTQ9UBF9 498 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 YARS2Q9Y2Z4 477 aaKnown RBP13.22□□□□□ -0.29
CPSF1-201ENST00000526271 VWA7Q9Y334 891 aa13.22□□□□□ -0.29
CPSF1-201ENST00000526271 GOLGA6L10A0A0M3HER8 536 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 TAPBPO15533 448 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 CTAG2O75638 210 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 ETHE1O95571 254 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 HIST1H2AGP0C0S8 130 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-201ENST00000526271 CCL3P10147 92 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 EPORP19235 508 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 HIST1H2ADP20671 130 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 FNTAP49354 379 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 LIM2P55344 173 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 FBXO48Q5FWF7 155 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 SPANXN3Q5MJ09 141 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 ZNF793Q6ZN11 406 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 DGAT2L6Q6ZPD8 337 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 TMEM200AQ86VY9 491 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 PPIL6Q8IXY8 311 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 MMP21Q8N119 569 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 GPATCH11Q8N954 259 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 GAL3ST3Q96A11 431 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 HIST1H2AHQ96KK5 128 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 SMC6Q96SB8 1091 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 HIST1H2AJQ99878 128 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 AIF1LQ9BQI0 150 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 TMEM79Q9BSE2 394 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 H2AFJQ9BTM1 129 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 TIMMDC1Q9NPL8 285 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 PRDM7Q9NQW5 492 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 ZNF490Q9ULM2 529 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-201ENST00000526271 EXPH5Q8NEV8 1989 aa13.21□□□□□ -0.29
CPSF1-201ENST00000526271 HRKO00198 91 aa13.2□□□□□ -0.3
CPSF1-201ENST00000526271 ERI3O43414 337 aaKnown RBP13.2□□□□□ -0.3
CPSF1-201ENST00000526271 ZFAND5O76080 213 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms