RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 HOOK1Q9UJC3 728 aaKnown RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 SH3BGRL2Q9UJC5 107 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 PAIP2BQ9ULR5 123 aaKnown RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.28□□□□□ -1.88
CD44-217ENST00000525348 AGTPBP1Q9UPW5 1226 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 ZHX2Q9Y6X8 837 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 ARID2Q68CP9 1835 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 WDR7Q9Y4E6 1490 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 UACAQ9BZF9 1416 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 YEATS2Q9ULM3 1422 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 SUPT6HQ7KZ85 1726 aaKnown RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 EDDM13A0A1B0GTR0 161 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 GOLGA6L7A0A1B0GV03 622 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 TCRBV21S2A2A0A5A6 115 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 ERICH2A1L162 156 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 OR6C65A6NJZ3 312 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 RSPH10B2B2RC85 870 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 E2F3O00716 465 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 CHUKO15111 745 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 CETN3O15182 167 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 MAPK13O15264 365 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 TADA2AO75478 443 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 STARD3NLO95772 234 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 DNTTP04053 509 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 ATP5BP06576 529 aaKnown RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 IVLP07476 585 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 ADRB2P07550 413 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 RSPH10BP0C881 870 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 TOP1P11387 765 aaKnown RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 ATP6V1B1P15313 513 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 IL10P22301 178 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 PRKACBP22694 351 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 MC5RP33032 325 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 CBX5P45973 191 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 ALDH3A2P51648 485 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 HADHBP55084 474 aaKnown RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 TMEM50BP56557 158 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 POLR2GP62487 172 aaKnown RBP eCLIP3.27□□□□□ -1.89
CD44-217ENST00000525348 GSTO1P78417 241 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 CDH18Q13634 790 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 ALCAMQ13740 583 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 NFE2L1Q14494 772 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 MAPRE2Q15555 327 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 NPTX1Q15818 432 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 MOGQ16653 247 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 Q3ZCU0 254 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 CFAP157Q5JU67 520 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 CCDC183Q5T5S1 534 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 AADACL4Q5VUY2 407 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 OR4A47Q6IF82 309 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 ZNF774Q6NX45 483 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 ANGPTL8Q6UXH0 198 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 USP50Q70EL3 339 aaPredicted RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 BRINP3Q76B58 766 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 LUZP1Q86V48 1076 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 CDC20BQ86Y33 519 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 CD302Q8IX05 232 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 NUP37Q8NFH4 326 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 OR7A2PQ8NGA2 310 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 CDC26Q8NHZ8 85 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 SLC22A8Q8TCC7 542 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 SHC3Q92529 594 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 HDAC11Q96DB2 347 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 ARSGQ96EG1 525 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 CNRIP1Q96F85 164 aaPredicted RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 OTUB1Q96FW1 271 aaPredicted RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 JPH2Q9BR39 696 aaPredicted RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 OVOL2Q9BRP0 275 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 RIOK1Q9BRS2 568 aaKnown RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 FAM49AQ9H0Q0 323 aaPredicted RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 PSTPIP2Q9H939 334 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 DNAJC4Q9NNZ3 241 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 GLRX2Q9NS18 164 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 ARGLU1Q9NWB6 273 aaPredicted RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 HPF1Q9NWY4 346 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 TEX10Q9NXF1 929 aaPredicted RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 CPSF3Q9UKF6 684 aaKnown RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 HPCAL4Q9UM19 191 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 EXOC7Q9UPT5 735 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 CHTOPQ9Y3Y2 248 aaKnown RBP3.27□□□□□ -1.89
CD44-217ENST00000525348 WRNQ14191 1432 aaPredicted RBP eCLIP3.27□□□□□ -1.89
CD44-217ENST00000525348 ARHGAP31Q2M1Z3 1444 aa3.27□□□□□ -1.89
CD44-217ENST00000525348 INSRP06213 1382 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 BIVM-ERCC5R4GMW8 1640 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 TTC37Q6PGP7 1564 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 CCDC171Q6TFL3 1326 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 MAPK8IP3Q9UPT6 1336 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 MAGI3Q5TCQ9 1506 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 KDM5BQ9UGL1 1544 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 CCDC162PA2VCL2 907 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 SHISA7A6NL88 538 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 SRRM5B3KS81 715 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 C2CD4DB7Z1M9 353 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 G3V2L1 256 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 H0YAE9 185 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 TRDMT1O14717 391 aaKnown RBP3.26□□□□□ -1.89
CD44-217ENST00000525348 WDR46O15213 610 aaKnown RBP3.26□□□□□ -1.89
CD44-217ENST00000525348 TSC22D2O75157 780 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 ATP6AP2O75787 350 aa3.26□□□□□ -1.89
CD44-217ENST00000525348 ERLIN2O94905 339 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms