RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TOR1AIP1Q5JTV8 583 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 CTSL3PQ5NE16 218 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 SHQ1Q6PI26 577 aaKnown RBP11.24□□□□□ -0.61
SYNPO-204ENST00000519664 FAM92BQ6ZTR7 304 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 COMMD6Q7Z4G1 85 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 RTN4RL1Q86UN2 441 aaPredicted RBP11.24□□□□□ -0.61
SYNPO-204ENST00000519664 CARM1Q86X55 608 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 OR4N5Q8IXE1 308 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 SLC7A5P1Q8MH63 180 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 FIBINQ8TAL6 211 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 TRNT1Q96Q11 434 aaKnown RBP11.24□□□□□ -0.61
SYNPO-204ENST00000519664 GPR83Q9NYM4 423 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 RGS17Q9UGC6 210 aaPredicted RBP11.24□□□□□ -0.61
SYNPO-204ENST00000519664 SNX7Q9UNH6 387 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 DOCK2Q92608 1830 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 A0A075B6Q4 140 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 B3GALT2O43825 422 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 CDC123O75794 336 aaPredicted RBP11.24□□□□□ -0.61
SYNPO-204ENST00000519664 MYF6P23409 242 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 NFATC3Q12968 1075 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 EIF2B5Q13144 721 aaKnown RBP11.24□□□□□ -0.61
SYNPO-204ENST00000519664 RAB33AQ14088 237 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 LIPKQ5VXJ0 399 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 ZNF783Q6ZMS7 281 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 LHFPL3Q86UP9 236 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 RANBP3LQ86VV4 465 aaPredicted RBP11.24□□□□□ -0.61
SYNPO-204ENST00000519664 SLC5A8Q8N695 610 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 DHRS1Q96LJ7 313 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 CASD1Q96PB1 797 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 SLC46A2Q9BY10 475 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 SP140LQ9H930 580 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 TNFRSF12AQ9NP84 129 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 COL22A1Q8NFW1 1626 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 SCN7AQ01118 1682 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 TUBGCP6Q96RT7 1819 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 C2orf92A0A1B0GVN3 265 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 WASH4PA8MWX3 477 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 MCIDASD6RGH6 385 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 S100A9P06702 114 aaKnown RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 MATN1P21941 496 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 PDHA2P29803 388 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 SLC15A1P46059 708 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 DHCR24Q15392 516 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 NNATQ16517 81 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 AMZ1Q400G9 498 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 ZNF542PQ5EBM4 170 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 CES4AQ5XG92 561 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 HSD11B1LQ7Z5J1 315 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 MEX3DQ86XN8 651 aaKnown RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 MARCH9Q86YJ5 346 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 ZFP41Q8N8Y5 198 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 LKAAEAR1Q8TD35 194 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 UFD1Q92890 307 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 ZNF597Q96LX8 424 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 ANKRA2Q9H9E1 313 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 SCN1AP35498 2009 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 TCRBV3S1A0A5B6 114 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 MROH6A6NGR9 719 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 ARHGEF33A8MVX0 844 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 TSPAN4O14817 238 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 B4GALT2O60909 372 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 ADAMTS4O75173 837 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 CELP19835 753 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 RORCP51449 518 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 CSTF1Q05048 431 aaKnown RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 DEFB134Q4QY38 66 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 BORAQ6PGQ7 559 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 Q6ZSR9 355 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 SH2D5Q6ZV89 423 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 DEFB119Q8N690 84 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 PSD4Q8NDX1 1056 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 OR9Q2Q8NGE9 314 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 ZNF675Q8TD23 568 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 AGPAT4Q9NRZ5 378 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 PAK1IP1Q9NWT1 392 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 PCDHGA10Q9Y5H3 936 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 CLDN4O14493 209 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 C6P13671 934 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 POLR2CP19387 275 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 DDX6P26196 483 aaKnown RBP eCLIP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 OR2B6P58173 313 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 COL16A1Q07092 1604 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 SLC3A1Q07837 685 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 SP140Q13342 867 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 SMN1Q16637 294 aaKnown RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 DUS1LQ6P1R4 473 aaKnown RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 ERN2Q76MJ5 926 aaKnown RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 ELMOD2Q8IZ81 293 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 ASCC1Q8N9N2 400 aaKnown RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 OR2T11Q8NH01 316 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 SLC12A9Q9BXP2 914 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 CXXC1Q9P0U4 656 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 IRAK3Q9Y616 596 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 LAMB1P07942 1786 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 ZSCAN5BA6NJL1 495 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 PRAMEF12O95522 483 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 HLA-FP30511 346 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 CLCA4Q14CN2 919 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 C6orf120Q7Z4R8 191 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 SNX29P2Q8IUI4 249 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms