RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 ZNF248Q8NDW4 579 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 OR5P2Q8WZ92 322 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 MRPL48Q96GC5 212 aaKnown RBP13.49□□□□□ -0.25
TCOF1-207ENST00000504761 PTCHD1Q96NR3 888 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 RPP25Q9BUL9 199 aaKnown RBP13.49□□□□□ -0.25
TCOF1-207ENST00000504761 RPF2Q9H7B2 306 aaKnown RBP13.49□□□□□ -0.25
TCOF1-207ENST00000504761 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 PRSS38A1L453 326 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 MCIDASD6RGH6 385 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 MASP1P48740 699 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 TMEFF1Q8IYR6 380 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 NAGSQ8N159 534 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 JSRP1Q96MG2 331 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-207ENST00000504761 HSPA12BQ96MM6 686 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 MCCC1Q96RQ3 725 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-207ENST00000504761 COPS4Q9BT78 406 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 MBNL1Q9NR56 388 aaKnown RBP13.48□□□□□ -0.25
TCOF1-207ENST00000504761 PCDHGA2Q9Y5H1 932 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 GVINP1Q7Z2Y8 2422 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 H0Y8X5 98 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 NADKO95544 446 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-207ENST00000504761 RABIFP47224 123 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 TAP2Q03519 686 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 ITGADQ13349 1161 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 MEP1AQ16819 746 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 AQP11Q8NBQ7 271 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 ZDHHC1Q8WTX9 485 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 CFHR5Q9BXR6 569 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 MRPS7Q9Y2R9 242 aaKnown RBP13.48□□□□□ -0.25
TCOF1-207ENST00000504761 FPR1P21462 350 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 UQCRC2P22695 453 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 ACSL1P33121 698 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 CDKL4Q5MAI5 379 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 NRROSQ86YC3 692 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 ZZZ3Q8IYH5 903 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 OR56A1Q8NGH5 318 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 FCRL4Q96PJ5 515 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 ALPK1Q96QP1 1244 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 P2RY12Q9H244 342 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 FBRSQ9HAH7 460 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 DMRT3Q9NQL9 472 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 GEMIN8Q9NWZ8 242 aaKnown RBP13.48□□□□□ -0.25
TCOF1-207ENST00000504761 CDC14AQ9UNH5 594 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 USP22Q9UPT9 525 aa13.48□□□□□ -0.25
TCOF1-207ENST00000504761 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-207ENST00000504761 UBXN7O94888 489 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 MED26O95402 600 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 CERS1P27544 350 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 MLLT1Q03111 559 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-207ENST00000504761 LRP8Q14114 963 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 CTC1Q2NKJ3 1217 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 TMEM125Q96AQ2 219 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 GSTK1Q9Y2Q3 226 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 YBX2Q9Y2T7 364 aaKnown RBP13.47□□□□□ -0.25
TCOF1-207ENST00000504761 NUP214P35658 2090 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-207ENST00000504761 PRAMEF26H0Y7S4 382 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 FBP2O00757 339 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 LAMTOR5O43504 91 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 ZNF217O75362 1048 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 AHCYP23526 432 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 TALDO1P37837 337 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 HTRA4P83105 476 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-207ENST00000504761 SHC2P98077 582 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 SYT16Q17RD7 645 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 PERM1Q5SV97 790 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 ZNF683Q8IZ20 524 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 NUP43Q8NFH3 380 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 DNAJA3Q96EY1 480 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 CHCHD6Q9BRQ6 235 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 TUBB1Q9H4B7 451 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 TNFRSF12AQ9NP84 129 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 KLHL42Q9P2K6 505 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 KHNYNO15037 678 aaKnown RBP13.47□□□□□ -0.25
TCOF1-207ENST00000504761 TAPBPO15533 448 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 ALDH3A2P51648 485 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 HNRNPKP61978 463 aaKnown RBP eCLIP13.47□□□□□ -0.25
TCOF1-207ENST00000504761 KCNAB2Q13303 367 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 TTLL10Q6ZVT0 673 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 AMER2Q8N7J2 671 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 GATSQ8NAP1 163 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 NETO1Q8TDF5 533 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 MUS81Q96NY9 551 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 SERTAD3Q9UJW9 196 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 KLHL33A6NCF5 533 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 GABRR3A8MPY1 467 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 CTSLP07711 333 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 JAK1P23458 1154 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 HENMT1Q5T8I9 393 aaKnown RBP13.47□□□□□ -0.25
TCOF1-207ENST00000504761 PTCRAQ6ISU1 281 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-207ENST00000504761 NEK10Q6ZWH5 1172 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 HLA-CQ95604 372 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 IFT27Q9BW83 186 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 MKRN2Q9H000 416 aaKnown RBP13.47□□□□□ -0.25
TCOF1-207ENST00000504761 MARCH7Q9H992 704 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 PDE7BQ9NP56 450 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 MAU2Q9Y6X3 613 aa13.47□□□□□ -0.25
TCOF1-207ENST00000504761 LOC100130705A0A1B0GUX0 176 aa13.46□□□□□ -0.25
TCOF1-207ENST00000504761 HSD17B1P14061 328 aa13.46□□□□□ -0.25
TCOF1-207ENST00000504761 KCTD21Q4G0X4 260 aa13.46□□□□□ -0.25
TCOF1-207ENST00000504761 HACD2Q6Y1H2 254 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms