RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PRIM2P49643 509 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 ACTR1AP61163 376 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 AP2B1P63010 937 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 DMPKQ09013 629 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 AP1B1Q10567 949 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 PIGHQ14442 188 aaPredicted RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 CYTH1Q15438 398 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 INAQ16352 499 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 MARC1Q5VT66 337 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 FAM69BQ5VUD6 431 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 NAA35Q5VZE5 725 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 KCTD16Q68DU8 428 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 KLHL10Q6JEL2 608 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 DNAJC24Q6P3W2 148 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 FAM199XQ6PEV8 388 aaPredicted RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 TMCO3Q6UWJ1 677 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 TMEM207Q6UWW9 146 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 GFRALQ6UXV0 394 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 RFX8Q6ZV50 586 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 BZW1Q7L1Q6 419 aaKnown RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 MON1BQ7L1V2 547 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 ZNF354CQ86Y25 554 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 NRROSQ86YC3 692 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 MAP7D3Q8IWC1 876 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 SAMD14Q8IZD0 417 aaPredicted RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 ZADH2Q8N4Q0 377 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 TEX26Q8N6G2 289 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 PAF1Q8N7H5 531 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 NIPA2Q8N8Q9 360 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 OR52L2PQ8NGH6 319 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 BCAS4Q8TDM0 211 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 HEXDCQ8WVB3 486 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 AP2M1Q96CW1 435 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 SLC41A2Q96JW4 573 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 C9orf72Q96LT7 481 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 TSGA13Q96PP4 275 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 PPP1R2P1Q96PQ5 205 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 WDR24Q96S15 920 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 WRAP53Q9BUR4 548 aaKnown RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 POLDIP3Q9BY77 421 aaKnown RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 TRABDQ9H4I3 376 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 AKIRIN1Q9H9L7 192 aaPredicted RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 ZBTB20Q9HC78 741 aaPredicted RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 PAPOLBQ9NRJ5 636 aaKnown RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 DECR2Q9NUI1 292 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 SPATS2LQ9NUQ6 558 aaKnown RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 PKD2L2Q9NZM6 624 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 LRFN1Q9P244 771 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 NYNRINQ9P2P1 1898 aaKnown RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 CNOT8Q9UFF9 292 aaKnown RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 LNPEPQ9UIQ6 1025 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 SUFUQ9UMX1 484 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 DOCK4Q8N1I0 1966 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 BIRC6Q9NR09 4857 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 SVEP1Q4LDE5 3571 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 IGKV2D-30A0A075B6S6 120 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 IGLV5-39A0A0G2JS06 123 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 A0A0J9YYE9 177 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 A0A0U1RQS6 177 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 SLC9B1P1A6NJY1 282 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 KMOO15229 486 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 CREB3O43889 395 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 UGDHO60701 494 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 TMEM63AO94886 807 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 SLCO2B1O94956 709 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 EPOP01588 193 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 TRBC1P01850 177 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 ERCC2P18074 760 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 NELFEP18615 380 aaKnown RBP3.73□□□□□ -1.81
USP54-217ENST00000498213 AGAP20933 346 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 IDSP22304 550 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 CCNCP24863 283 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 PTPN4P29074 926 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 CD86P42081 329 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 HALP42357 657 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 CA7P43166 264 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 GNPDA1P46926 289 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 CAPZBP47756 277 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 PAPOLAP51003 745 aaKnown RBP3.73□□□□□ -1.81
USP54-217ENST00000498213 STC1P52823 247 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 UBE2IP63279 158 aaKnown RBP3.73□□□□□ -1.81
USP54-217ENST00000498213 TUBB4BP68371 445 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 PTP4A2Q12974 167 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 CDC16Q13042 620 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 ATP1A4Q13733 1029 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 TUBB2AQ13885 445 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 DPYSQ14117 519 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 PDK2Q15119 407 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 LONRF1Q17RB8 773 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 DEFB113Q30KQ7 82 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 ANXA2RQ3ZCQ2 193 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 ANKRD20A8PQ5CZ79 823 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 TCP11X2Q5H9J9 407 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 C10orf62Q5T681 223 aaPredicted RBP3.73□□□□□ -1.81
USP54-217ENST00000498213 HENMT1Q5T8I9 393 aaKnown RBP3.73□□□□□ -1.81
USP54-217ENST00000498213 VWA5B1Q5TIE3 1220 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 CES4AQ5XG92 561 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 RAET1GQ6H3X3 334 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 ACAD10Q6JQN1 1059 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 CCDC144NLQ6NUI1 221 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms