RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 C21orf140B9A014 251 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 SLCO1B7G3V0H7 640 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 TERTO14746 1132 aaKnown RBP11.23□□□□□ -0.61
CUX1-210ENST00000497815 LSM1O15116 133 aaKnown RBP11.23□□□□□ -0.61
CUX1-210ENST00000497815 EDF1O60869 148 aaKnown RBP11.23□□□□□ -0.61
CUX1-210ENST00000497815 PRKRAO75569 313 aaKnown RBP11.23□□□□□ -0.61
CUX1-210ENST00000497815 MYO1DO94832 1006 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 ONECUT2O95948 504 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 RAB40ALP0C0E4 278 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 ZGLP1P0C6A0 271 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 CPN2P22792 545 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 TIA1P31483 386 aaKnown RBP eCLIP11.23□□□□□ -0.611e-6■■■■□ 22.9
CUX1-210ENST00000497815 EIF2S3P41091 472 aaKnown RBP11.23□□□□□ -0.61
CUX1-210ENST00000497815 FOLR3P41439 243 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 HK2P52789 917 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 HNRNPH2P55795 449 aaKnown RBP11.23□□□□□ -0.61
CUX1-210ENST00000497815 RAB38P57729 211 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 RAE1P78406 368 aaKnown RBP11.23□□□□□ -0.61
CUX1-210ENST00000497815 SF3A3Q12874 501 aaKnown RBP eCLIP11.23□□□□□ -0.61
CUX1-210ENST00000497815 RFTN2Q52LD8 501 aaPredicted RBP11.23□□□□□ -0.61
CUX1-210ENST00000497815 MAVSQ7Z434 540 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 GPR180Q86V85 440 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 LAPTM4BQ86VI4 370 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 TBC1D20Q96BZ9 403 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 PPP3R2Q96LZ3 170 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 CSF3RQ99062 836 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 CCT7Q99832 543 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 C1orf50Q9BV19 199 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 GPR87Q9BY21 358 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 WDR55Q9H6Y2 383 aaPredicted RBP11.23□□□□□ -0.61
CUX1-210ENST00000497815 AKTIPQ9H8T0 292 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 FGFR1OP2Q9NVK5 253 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 LYARQ9NX58 379 aaKnown RBP11.23□□□□□ -0.61
CUX1-210ENST00000497815 VTI1BQ9UEU0 232 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 PHF11Q9UIL8 331 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 ADAM29Q9UKF5 820 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 DAPP1Q9UN19 280 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 PADI2Q9Y2J8 665 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 ATG4BQ9Y4P1 393 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 USH1CQ9Y6N9 552 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 SPACA6W5XKT8 324 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 CACNA1AO00555 2505 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 IGLV3-12A0A075B6K2 115 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 A0A1W2PR48 441 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 GLOD5A6NK44 160 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 VSTM2BA6NLU5 285 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 SDHDO14521 159 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 RRP8O43159 456 aaKnown RBP11.22□□□□□ -0.61
CUX1-210ENST00000497815 DIAPH2O60879 1101 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 KLF7O75840 302 aaPredicted RBP11.22□□□□□ -0.61
CUX1-210ENST00000497815 BMP10O95393 424 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 ALBP02768 609 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 HEXBP07686 556 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 FHP07954 510 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 ANXA4P09525 319 aaPredicted RBP11.22□□□□□ -0.61
CUX1-210ENST00000497815 SPTBP11277 2137 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 PRPH2P23942 346 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 PTPN4P29074 926 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 EPHA3P29320 983 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 HNRNPFP52597 415 aaKnown RBP11.22□□□□□ -0.61
CUX1-210ENST00000497815 AQP5P55064 265 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 KLC1Q07866 573 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 SLC9B1Q4ZJI4 515 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 C6orf136Q5SQH8 315 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 C18orf63Q68DL7 685 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 NXNQ6DKJ4 435 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 FAAH2Q6GMR7 532 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 NOXRED1Q6NXP6 359 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 LRRC34Q8IZ02 419 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 FNDC5Q8NAU1 212 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 TMEM52Q8NDY8 209 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 SPSB2Q99619 263 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 CRB3Q9BUF7 120 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 DPH1Q9BZG8 443 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 SLC26A1Q9H2B4 701 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 CCDC134Q9H6E4 229 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 WDR54Q9H977 334 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 MEAF6Q9HAF1 191 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 CLK4Q9HAZ1 481 aaKnown RBP11.22□□□□□ -0.61
CUX1-210ENST00000497815 LYRM4Q9HD34 91 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 NPHS2Q9NP85 383 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 C14orf105Q9NVL8 296 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 TEX10Q9NXF1 929 aaPredicted RBP11.22□□□□□ -0.61
CUX1-210ENST00000497815 FAM53CQ9NYF3 392 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 KCMF1Q9P0J7 381 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 MCM8Q9UJA3 840 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 C3orf18Q9UK00 162 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 KCND3Q9UK17 655 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 NXT1Q9UKK6 140 aaKnown RBP11.22□□□□□ -0.61
CUX1-210ENST00000497815 TCFL5Q9UL49 500 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 MKL2Q9ULH7 1088 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 DLGAP4Q9Y2H0 992 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 ASB4Q9Y574 426 aa11.22□□□□□ -0.61
CUX1-210ENST00000497815 MYOCOSA0A1B0GUC4 107 aa11.21□□□□□ -0.61
CUX1-210ENST00000497815 TAF4O00268 1085 aa11.21□□□□□ -0.61
CUX1-210ENST00000497815 ZNF195O14628 629 aa11.21□□□□□ -0.61
CUX1-210ENST00000497815 AIFM1O95831 613 aa11.21□□□□□ -0.61
CUX1-210ENST00000497815 UMODP07911 640 aa11.21□□□□□ -0.61
CUX1-210ENST00000497815 IL3P08700 152 aa11.21□□□□□ -0.61
CUX1-210ENST00000497815 CD63P08962 238 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms