RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 PYURFQ96I23 114 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 WDR77Q9BQA1 342 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-215ENST00000496447 MND1Q9BWT6 205 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 MALT1Q9UDY8 824 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 NALCNQ8IZF0 1738 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 TEX46H3BTG2 121 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 HCRTR2O43614 444 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 HOXA11P31270 313 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-215ENST00000496447 PLCXD2Q0VAA5 305 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 ARL9Q6T311 187 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 EPGNQ6UW88 154 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 MARVELD2Q8N4S9 558 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 GATSQ8NAP1 163 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 CANT1Q8WVQ1 401 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 RAB8BQ92930 207 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 ALPK1Q96QP1 1244 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 OARD1Q9Y530 152 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 FAM208AQ9UK61 1670 aaKnown RBP12.65□□□□□ -0.38
PTPRF-215ENST00000496447 A0A1B0GVT2 93 aa12.65□□□□□ -0.39
PTPRF-215ENST00000496447 SCO2O43819 266 aa12.65□□□□□ -0.39
PTPRF-215ENST00000496447 FARS2O95363 451 aaKnown RBP12.65□□□□□ -0.39
PTPRF-215ENST00000496447 GABRA3P34903 492 aa12.65□□□□□ -0.39
PTPRF-215ENST00000496447 RORCP51449 518 aa12.65□□□□□ -0.39
PTPRF-215ENST00000496447 TMEM225Q6GV28 225 aa12.65□□□□□ -0.39
PTPRF-215ENST00000496447 REEP3Q6NUK4 255 aa12.65□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF550Q7Z398 422 aa12.65□□□□□ -0.39
PTPRF-215ENST00000496447 NAXEQ8NCW5 288 aa12.65□□□□□ -0.39
PTPRF-215ENST00000496447 PEX13Q92968 403 aa12.65□□□□□ -0.39
PTPRF-215ENST00000496447 TMEM5Q9Y2B1 443 aa12.65□□□□□ -0.39
PTPRF-215ENST00000496447 PCDHB14Q9Y5E9 798 aa12.65□□□□□ -0.39
PTPRF-215ENST00000496447 LRRC37A3O60309 1634 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 FABP12A6NFH5 140 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 E7EQ34 232 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 CREG1O75629 220 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 CBLP22681 906 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 PRKACBP22694 351 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 TMBIM6P55061 237 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 PLP2Q04941 152 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 RNF111Q6ZNA4 994 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 TMEM25Q86YD3 366 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 JAGN1Q8N5M9 183 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 C9orf43Q8TAL5 461 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-215ENST00000496447 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.64□□□□□ -0.39
PTPRF-215ENST00000496447 CPNE2Q96FN4 548 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-215ENST00000496447 MAPKAP1Q9BPZ7 522 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 DPH7Q9BTV6 452 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 TSSK6Q9BXA6 273 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 SLC17A9Q9BYT1 436 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF639Q9UID6 485 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 CHP2O43745 196 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 ITGA5P08648 1049 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 THEGLP0DJG4 465 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 CD70P32970 193 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 RPS15AP62244 130 aaKnown RBP12.64□□□□□ -0.39
PTPRF-215ENST00000496447 MVKQ03426 396 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 MAB21L1Q13394 359 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 TPRG1LQ5T0D9 272 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 TMEM17Q86X19 198 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 PLXDC1Q8IUK5 500 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 FAM86B1Q8N7N1 296 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 OR9I1Q8NGQ6 314 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 IL17FQ96PD4 163 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 GFM1Q96RP9 751 aaKnown RBP12.64□□□□□ -0.39
PTPRF-215ENST00000496447 NPLQ9BXD5 320 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-215ENST00000496447 ASB6Q9NWX5 421 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 NLGN3Q9NZ94 848 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 PPP4R1LQ9P1A2 415 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 A0A1W2PPL8 197 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 MAFKO60675 156 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 SDC3O75056 442 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 EPCAMP16422 314 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 FUT4P22083 530 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 SLC15A1P46059 708 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 RABIFP47224 123 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 TBPL1P62380 186 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 IRF5Q13568 498 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 CLLU1OSQ5K130 101 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 KIAA0319Q5VV43 1072 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 DGLUCYQ7Z3D6 616 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF285Q96NJ3 590 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF382Q96SR6 550 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 MCHR1Q99705 422 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 LIN28AQ9H9Z2 209 aaKnown RBP12.64□□□□□ -0.39
PTPRF-215ENST00000496447 OAZ3Q9UMX2 235 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 PCDHGB2Q9Y5G2 931 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 PSAT1Q9Y617 370 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF878C9JN71 531 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 H3BQ06 376 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-215ENST00000496447 J3QLW9 94 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 PTGESO14684 152 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 CNMDO75829 334 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 SNAPC5O75971 98 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 HCKP08631 526 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 RNH1P13489 461 aaKnown RBP12.64□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF19P17023 458 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 CD9P21926 228 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 LEPRP48357 1165 aaKnown RBP12.64□□□□□ -0.39
PTPRF-215ENST00000496447 DNAJB13P59910 316 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 OR4C15Q8NGM1 316 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 TRIB3Q96RU7 358 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms