RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	ATOH8	Q96SQ7	321 aa		10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	SORBS1	Q9BX66	1292 aa	Known RBP	10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	MS4A8	Q9BY19	250 aa		10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	DEFB126	Q9BYW3	111 aa		10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	EHD1	Q9H4M9	534 aa		10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	NT5DC2	Q9H857	520 aa		10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	PRDM7	Q9NQW5	492 aa		10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	PRTFDC1	Q9NRG1	225 aa		10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	IGSF5	Q9NSI5	407 aa		10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	DEPP	Q9NTK1	212 aa		10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	RNF14	Q9UBS8	474 aa		10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	DAPP1	Q9UN19	280 aa		10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	PPIE	Q9UNP9	301 aa	Known RBP	10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	SETD2	Q9BYW2	2564 aa	Predicted RBP	10.85	□□□□□ -0.67
VTI1A-208	ENST00000494728	HMX2	A2RU54	273 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	PINLYP	A6NC86	204 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	LRRC14B	A6NHZ5	514 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	UBXN8	O00124	270 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ADAM10	O14672	748 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	HNRNPR	O43390	633 aa	Known RBP	10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ASNA1	O43681	348 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	B3GALT2	O43825	422 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	CCNT2	O60583	730 aa	Known RBP	10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ZNF354A	O60765	605 aa	Predicted RBP	10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	LDB3	O75112	727 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ITGA10	O75578	1167 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ZNF24	P17028	368 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	TFEB	P19484	476 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	TNFRSF8	P28908	595 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	CYB561	P49447	251 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	MEOX1	P50221	254 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	MTTP	P55157	894 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	HSD17B7	P56937	341 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	GPR85	P60893	370 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ATP6V0D1	P61421	351 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ID2	Q02363	134 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	SLC13A2	Q13183	592 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	CHIT1	Q13231	466 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ART3	Q13508	389 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	BMPR2	Q13873	1038 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	SULT1C3	Q6IMI6	304 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	TRIM40	Q6P9F5	258 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	BNC2	Q6ZN30	1099 aa	Predicted RBP	10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ISCA2	Q86U28	154 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	SPPL2C	Q8IUH8	684 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	SULF2	Q8IWU5	870 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	MCEMP1	Q8IX19	187 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	SRRM1	Q8IYB3	904 aa	Known RBP	10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	CENPL	Q8N0S6	344 aa	Predicted RBP	10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	KRT78	Q8N1N4	520 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	TCAIM	Q8N3R3	496 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ZNF808	Q8N4W9	903 aa	Predicted RBP	10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	BBOF1	Q8ND07	529 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	TTL	Q8NG68	377 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ZNF473	Q8WTR7	871 aa	Known RBP	10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	KCTD4	Q8WVF5	259 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	CDKL2	Q92772	493 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	PTCD3	Q96EY7	689 aa	Known RBP	10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	TSPAN17	Q96FV3	270 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	MAGED4	Q96JG8	741 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	MAPKAP1	Q9BPZ7	522 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	NPL	Q9BXD5	320 aa	Predicted RBP	10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	CD244	Q9BZW8	370 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	KCMF1	Q9P0J7	381 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	SUCO	Q9UBS9	1254 aa	Known RBP	10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	FBXW2	Q9UKT8	454 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	RNF112	Q9ULX5	631 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ARHGAP21	Q5T5U3	1957 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	NIN	Q8N4C6	2090 aa		10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	ANKHD1	Q8IWZ3	2542 aa	Known RBP	10.84	□□□□□ -0.67
VTI1A-208	ENST00000494728	NF1	P21359	2839 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZNF469	Q96JG9	3925 aa	Predicted RBP	10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	ANKDD1B	A6NHY2	528 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	SAP18	O00422	153 aa	Known RBP	10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	CLGN	O14967	610 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	HS6ST1	O60243	411 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	H2AFY	O75367	372 aa	Known RBP	10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	OR2J2	O76002	312 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	SNRPB2	P08579	225 aa	Known RBP	10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	MTHFD2	P13995	350 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	GSTM2	P28161	218 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	HTR1E	P28566	365 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	MSH2	P43246	934 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	MAGEA4	P43358	317 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	CLCN2	P51788	898 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	SLC7A5	Q01650	507 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	GUCY2D	Q02846	1103 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	RBPJ	Q06330	500 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZNF630	Q2M218	657 aa	Predicted RBP	10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	CMPK2	Q5EBM0	449 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	CDKL4	Q5MAI5	379 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	FAM219B	Q5XKK7	198 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	SYT10	Q6XYQ8	523 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	CYS1	Q717R9	158 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	LRRC70	Q7Z2Q7	622 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZNF595	Q8IYB9	648 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	SLC34A3	Q8N130	599 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	CYP4Z2P	Q8N1L4	340 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	MARVELD2	Q8N4S9	558 aa		10.83	□□□□□ -0.68

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