RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 IFNA16P05015 189 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 C1GALT1C1LP0DN25 315 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 SOX3P41225 446 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 GPR143P51810 404 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 NUP107P57740 925 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 PPIAP62937 165 aaKnown RBP11.75□□□□□ -0.53
SKA1-205ENST00000494518 ID2Q02363 134 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 PMPCAQ10713 525 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 BMPR2Q13873 1038 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 FASTKD3Q14CZ7 662 aaKnown RBP11.75□□□□□ -0.53
SKA1-205ENST00000494518 TESK1Q15569 626 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 ZNF750Q32MQ0 723 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 EMC4Q5J8M3 183 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 STEAP4Q687X5 459 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 TMIGD1Q6UXZ0 262 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 SLCO4C1Q6ZQN7 724 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 ZC3HC1Q86WB0 502 aaKnown RBP11.75□□□□□ -0.53
SKA1-205ENST00000494518 ARMC10Q8N2F6 343 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 NKAPQ8N5F7 415 aaKnown RBP11.75□□□□□ -0.53
SKA1-205ENST00000494518 ZNF321PQ8N8H1 164 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 ZFP62Q8NB50 900 aaPredicted RBP11.75□□□□□ -0.53
SKA1-205ENST00000494518 ACBD4Q8NC06 268 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 PSD4Q8NDX1 1056 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 C16orf52Q8NHV5 167 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 ASB15Q8WXK1 588 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 ESAMQ96AP7 390 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 CAPZA3Q96KX2 299 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 TRIM31Q9BZY9 425 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 TP63Q9H3D4 680 aaPredicted RBP11.75□□□□□ -0.53
SKA1-205ENST00000494518 CLK4Q9HAZ1 481 aaKnown RBP11.75□□□□□ -0.53
SKA1-205ENST00000494518 PRM3Q9NNZ6 103 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 HPF1Q9NWY4 346 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 SNX12Q9UMY4 172 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 TEX264Q9Y6I9 313 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 PRRC2AP48634 2157 aaKnown RBP11.75□□□□□ -0.53
SKA1-205ENST00000494518 MPDZO75970 2070 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 LRIT2A6NDA9 550 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 TMEM200CA6NKL6 621 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 CDK2AP1O14519 115 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 CLGNO14967 610 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 SH3BGRLO75368 114 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 TBX6O95947 436 aaPredicted RBP11.74□□□□□ -0.53
SKA1-205ENST00000494518 GNAZP19086 355 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 SLC6A12P48065 614 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 MGAT5Q09328 741 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 MORF4L2Q15014 288 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 TERF2Q15554 542 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 ARHGAP11AQ6P4F7 1023 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 VN1R5Q7Z5H4 357 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 SNX31Q8N9S9 440 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 FBXO36Q8NEA4 188 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 OR2M7Q8NG81 312 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 OR5M3Q8NGP4 307 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 ASB5Q8WWX0 329 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 NRGNQ92686 78 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 RND1Q92730 232 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 RHBDF1Q96CC6 855 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 SEC16BQ96JE7 1060 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 QRFPRQ96P65 431 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 TMEM79Q9BSE2 394 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 OR8D2Q9GZM6 311 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 COPS7BQ9H9Q2 264 aaPredicted RBP11.74□□□□□ -0.53
SKA1-205ENST00000494518 CAB39LQ9H9S4 337 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 ADAP2Q9NPF8 381 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 PNPLA3Q9NST1 481 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 WWOXQ9NZC7 414 aa11.74□□□□□ -0.53
SKA1-205ENST00000494518 YARS2Q9Y2Z4 477 aaKnown RBP11.74□□□□□ -0.53
SKA1-205ENST00000494518 HRNRQ86YZ3 2850 aaPredicted RBP11.73□□□□□ -0.53
SKA1-205ENST00000494518 ANKDD1BA6NHY2 528 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 CLDN4O14493 209 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 FANCGO15287 622 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 TAPBPO15533 448 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 PRAMEF4O60810 478 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 DIAPH2O60879 1101 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 LDB3O75112 727 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 CAPN3P20807 821 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 CHRNB4P30926 498 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 GMPRP36959 345 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 HSPA7P48741 367 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 HNMTP50135 292 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 LIM2P55344 173 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 HSD17B7P56937 341 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 CDKL1Q00532 357 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 TFF3Q07654 80 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 PDIA2Q13087 525 aaKnown RBP11.73□□□□□ -0.53
SKA1-205ENST00000494518 ELAVL1Q15717 326 aaKnown RBP11.73□□□□□ -0.53
SKA1-205ENST00000494518 PRAMEF9Q5VWM5 478 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 TMEM211Q6ICI0 200 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 ZNF585AQ6P3V2 769 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 TRIM40Q6P9F5 258 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 ADAMTSL2Q86TH1 951 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 TMEM200AQ86VY9 491 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 KRT78Q8N1N4 520 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 OR2L5Q8NG80 312 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 EXT2Q93063 718 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 F2RL3Q96RI0 385 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 RASL10BQ96S79 203 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 TREX2Q9BQ50 279 aaPredicted RBP11.73□□□□□ -0.53
SKA1-205ENST00000494518 NPLQ9BXD5 320 aaPredicted RBP11.73□□□□□ -0.53
SKA1-205ENST00000494518 TTTY12Q9BZ98 90 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms