RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SLC28A1O00337 649 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MANBAO00462 879 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NME4O00746 187 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PRAMEF10O60809 474 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PGRP06401 933 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF806P0C7X5 589 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MAPK1P28482 360 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 OR4D2P58180 307 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 BCL2A1Q16548 175 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CPTPQ5TA50 214 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 XKRXQ6PP77 449 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 METTL4Q8N3J2 472 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 WDR36Q8NI36 951 aaKnown RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RLN3Q8WXF3 142 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RPP25Q9BUL9 199 aaKnown RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SLC2A11Q9BYW1 496 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RACGAP1Q9H0H5 632 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FAM118AQ9NWS6 357 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 WBP1LQ9NX94 342 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ABCG2Q9UNQ0 655 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SCN4AP35499 1836 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ALPK2Q86TB3 2170 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ELOVL7A1L3X0 281 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ATP6V1G2-DDX39BF2Z307 99 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 B3GALNT1O75752 331 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CHRM5P08912 532 aaPredicted RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PRKCAP17252 672 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 OXTRP30559 389 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RPS26P62854 115 aaKnown RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MAD2L1Q13257 205 aaPredicted RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TUBB3Q13509 450 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FAM46CQ5VWP2 391 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PNCKQ6P2M8 343 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 KRT74Q7RTS7 529 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CACTIN-AS1Q8N1I8 211 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 UXS1Q8NBZ7 420 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 OR4E2Q8NGC2 313 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 OR4A15Q8NGL6 344 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF431Q8TF32 576 aaPredicted RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SLC38A4Q969I6 547 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DHRS9Q9BPW9 319 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TUBB1Q9H4B7 451 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF451Q9Y4E5 1061 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 XIRP2A4UGR9 3374 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZSWIM8A7E2V4 1837 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF860A6NHJ4 632 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NUPL2O15504 423 aaKnown RBP10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SOCS5O75159 536 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NAT2P11245 290 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 HOXB2P14652 356 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TACR1P25103 407 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 IL18Q14116 193 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LYPLAL1Q5VWZ2 237 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GPR153Q6NV75 609 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF683Q8IZ20 524 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CLECL1Q8IZS7 167 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SLC34A3Q8N130 599 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF740Q8NDX6 193 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TRMT2BQ96GJ1 504 aaKnown RBP10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 APIPQ96GX9 242 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PSD2Q9BQI7 771 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 WDR26Q9H7D7 661 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 AGPAT4Q9NRZ5 378 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TMEM181Q9P2C4 612 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NDOR1Q9UHB4 597 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GSTK1Q9Y2Q3 226 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 A0A0G2JPF8 293 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 AGAP5A6NIR3 686 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MAGEB17A8MXT2 336 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 HNRNPCL3B7ZW38 293 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LINC01565O15544 149 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 HNRNPCL4P0DMR1 293 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CRHBPP24387 322 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DPP6P42658 865 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MANFP55145 182 aaKnown RBP10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DNAJB13P59910 316 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 UBXN2BQ14CS0 331 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 OR2T11Q8NH01 316 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CCDC3Q9BQI4 270 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SLC35C2Q9NQQ7 365 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NCKAP1Q9Y2A7 1128 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PCDHGA8Q9Y5G5 932 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NME6O75414 186 aaPredicted RBP10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SEC14L2O76054 403 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 C1SP09871 688 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TIMP2P16035 220 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PSMB5P28074 263 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TAGLNQ01995 201 aaKnown RBP10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ID2Q02363 134 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RUNX3Q13761 415 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DOC2AQ14183 400 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FXNQ16595 210 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PDE12Q6L8Q7 609 aaKnown RBP10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 HS3ST5Q8IZT8 346 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SLC37A3Q8NCC5 494 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 OR5AR1Q8NGP9 310 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 IPCEF1Q8WWN9 437 aaPredicted RBP10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MAL2Q969L2 176 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TRIB3Q96RU7 358 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GON7Q9BXV9 100 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms