RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 MTHFD2P13995 350 aa21.48■■□□□ 1.03
COL9A3-213ENST00000489045 CLCN2P51788 898 aa21.48■■□□□ 1.03
COL9A3-213ENST00000489045 WHAMMP3Q1A5X7 153 aa21.48■■□□□ 1.03
COL9A3-213ENST00000489045 CCDC91Q7Z6B0 441 aa21.48■■□□□ 1.03
COL9A3-213ENST00000489045 ZNF473Q8WTR7 871 aaKnown RBP21.48■■□□□ 1.03
COL9A3-213ENST00000489045 UBE2E3Q969T4 207 aa21.48■■□□□ 1.03
COL9A3-213ENST00000489045 FRMD6Q96NE9 622 aa21.48■■□□□ 1.03
COL9A3-213ENST00000489045 KCNC2Q96PR1 638 aa21.48■■□□□ 1.03
COL9A3-213ENST00000489045 TSPAN10Q9H1Z9 355 aaPredicted RBP21.48■■□□□ 1.03
COL9A3-213ENST00000489045 NINJ2Q9NZG7 142 aa21.48■■□□□ 1.03
COL9A3-213ENST00000489045 CELSR2Q9HCU4 2923 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 TRGV8A0A0C4DH27 118 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 SYCE1LA8MT33 242 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 PHBP35232 272 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 DCTP40126 519 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 CYB561P49447 251 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 ALDH6A1Q02252 535 aaKnown RBP21.47■■□□□ 1.03
COL9A3-213ENST00000489045 RBPJQ06330 500 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 RCN2Q14257 317 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 MAPKAPK3Q16644 382 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 FAM83EQ2M2I3 478 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 MED27Q6P2C8 311 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 ZNF793Q6ZN11 406 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 UBE3DQ7Z6J8 389 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 ZNF227Q86WZ6 799 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 LAS2Q8IYD9 372 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 ARMC10Q8N2F6 343 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 FAM98AQ8NCA5 519 aaKnown RBP21.47■■□□□ 1.03
COL9A3-213ENST00000489045 RHEBL1Q8TAI7 183 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 THAP3Q8WTV1 239 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-213ENST00000489045 NCLNQ969V3 563 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 VMP1Q96GC9 406 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 ROGDIQ9GZN7 287 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 TRIM45Q9H8W5 580 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-213ENST00000489045 ADAP2Q9NPF8 381 aa21.47■■□□□ 1.03
COL9A3-213ENST00000489045 ZNF223Q9UK11 482 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-213ENST00000489045 CACNA1DQ01668 2161 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 RTCAO00442 366 aaKnown RBP21.46■■□□□ 1.03
COL9A3-213ENST00000489045 FCHO1O14526 889 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 NME2P1O60361 137 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 SH3BGRLO75368 114 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 EPB42P16452 691 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 NME2P22392 152 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 TRHRP34981 398 aaPredicted RBP21.46■■□□□ 1.03
COL9A3-213ENST00000489045 HLCSP50747 726 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 PCDH1Q08174 1060 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 PNPLA5Q7Z6Z6 429 aaPredicted RBP21.46■■□□□ 1.03
COL9A3-213ENST00000489045 TEX9Q8N6V9 391 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 SRFBP1Q8NEF9 429 aaKnown RBP21.46■■□□□ 1.03
COL9A3-213ENST00000489045 GPR137Q96N19 417 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 TBCDQ9BTW9 1192 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 ACSS3Q9H6R3 686 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 MTRF1LQ9UGC7 380 aaKnown RBP21.46■■□□□ 1.03
COL9A3-213ENST00000489045 FBXW2Q9UKT8 454 aa21.46■■□□□ 1.03
COL9A3-213ENST00000489045 PPIEQ9UNP9 301 aaKnown RBP21.46■■□□□ 1.03
COL9A3-213ENST00000489045 A0A096LPK6 155 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 MYOCOSA0A1B0GUC4 107 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 TGFB1P01137 390 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 GFAPP14136 432 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 ATP5A1P25705 553 aaKnown RBP21.45■■□□□ 1.02
COL9A3-213ENST00000489045 SERPINB8P50452 374 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 GPR143P51810 404 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 NAA30Q147X3 362 aaPredicted RBP21.45■■□□□ 1.02
COL9A3-213ENST00000489045 SETDB1Q15047 1291 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 ACAP2Q15057 778 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 GRHL2Q6ISB3 625 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 ACOT4Q8N9L9 421 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 OR7G3Q8NG95 312 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 ZNF592Q92610 1267 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 MAPKAP1Q9BPZ7 522 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 LYRM4Q9HD34 91 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 KCMF1Q9P0J7 381 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 DMGDHQ9UI17 866 aaKnown RBP21.45■■□□□ 1.02
COL9A3-213ENST00000489045 SH3BGRL2Q9UJC5 107 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 ANGPTL3Q9Y5C1 460 aa21.45■■□□□ 1.02
COL9A3-213ENST00000489045 CCDC189A1A4V9 331 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 SYNDIG1LA6NDD5 238 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 SAP18O00422 153 aaKnown RBP21.44■■□□□ 1.02
COL9A3-213ENST00000489045 SLC19A2O60779 497 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 CTNSO60931 367 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 KLHL2O95198 593 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 MLYCDO95822 493 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 ALDOAP04075 364 aaKnown RBP21.44■■□□□ 1.02
COL9A3-213ENST00000489045 IFNA16P05015 189 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 TYK2P29597 1187 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 SERPINB1P30740 379 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 CA7P43166 264 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 ELAVL1Q15717 326 aaKnown RBP21.44■■□□□ 1.02
COL9A3-213ENST00000489045 PFKFB4Q16877 469 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 ZNF800Q2TB10 664 aaPredicted RBP eCLIP21.44■■□□□ 1.02
COL9A3-213ENST00000489045 TMEM35AQ53FP2 167 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 CEP128Q6ZU80 1094 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 CHSY3Q70JA7 882 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 RNF175Q8N4F7 328 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 MMGT1Q8N4V1 131 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 NOA1Q8NC60 698 aaKnown RBP21.44■■□□□ 1.02
COL9A3-213ENST00000489045 TMEM125Q96AQ2 219 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 CCDC77Q9BR77 488 aa21.44■■□□□ 1.02
COL9A3-213ENST00000489045 CDC42EP4Q9H3Q1 356 aaKnown RBP21.44■■□□□ 1.02
COL9A3-213ENST00000489045 LRRC14BA6NHZ5 514 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms