RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 AURKBQ96GD4 344 aaPredicted RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 ZNF764Q96H86 408 aaPredicted RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 THUMPD3Q9BV44 507 aaKnown RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 SYNPO2LQ9H987 977 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 RIMS3Q9UJD0 308 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 ERVK-11Q9UQG0 969 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 KLHL20Q9Y2M5 609 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 GMEB1Q9Y692 573 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 A0A0A6YYD5 115 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 C4orf47A7E2U8 309 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 C2orf74A8MZ97 194 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 FAM220BPB1ANY3 271 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 ZW10O43264 779 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 GDF9O60383 454 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 CKMT1AP12532 417 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 GPR3P46089 330 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 GZMMP51124 257 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 TRA2BP62995 288 aaKnown RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 RELAQ04206 551 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 SLC14A1Q13336 389 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 MUM1Q2TAK8 710 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 NKAIN2Q5VXU1 208 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 OR4C11Q6IEV9 310 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 KLHL35Q6PF15 583 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 SPRED1Q7Z699 444 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 TMEM126BQ8IUX1 230 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 TNIP2Q8NFZ5 429 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 OR2T12Q8NG77 320 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 GOT1L1Q8NHS2 421 aaPredicted RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 SLCO4A1Q96BD0 722 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 TM4SF18Q96CE8 201 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 MS4A6EQ96DS6 147 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 SCN3AQ9NY46 2000 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 SH3BP4Q9P0V3 963 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 GVINP1Q7Z2Y8 2422 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 TCRBV5S2A0A599 114 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 ARHGAP10A1A4S6 786 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 NVLO15381 856 aaKnown RBP13.48□□□□□ -0.25
CUX1-209ENST00000487284 SH3BP5O60239 455 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 CPSF4O95639 269 aaKnown RBP13.48□□□□□ -0.25
CUX1-209ENST00000487284 SERPIND1P05546 499 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 GPIP06744 558 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 NCK1P16333 377 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 GGT1P19440 569 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 MAGP20916 626 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 ABHD18Q0P651 414 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 MPEG1Q2M385 716 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 AMZ1Q400G9 498 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 WLSQ5T9L3 541 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 ARMC6Q6NXE6 501 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 IRGCQ6NXR0 463 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 SPESP1Q6UW49 350 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 VN1R4Q7Z5H5 301 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 SPPL2CQ8IUH8 684 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 DTWD1Q8N5C7 304 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 OR2L5Q8NG80 312 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 OR10A6Q8NH74 314 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 NAT6Q93015 286 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 CNDP2Q96KP4 475 aaKnown RBP13.48□□□□□ -0.25
CUX1-209ENST00000487284 TEFMQ96QE5 360 aaKnown RBP13.48□□□□□ -0.25
CUX1-209ENST00000487284 C17orf62Q9BQA9 187 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 CCDC3Q9BQI4 270 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 SLC6A16Q9GZN6 736 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 ABCG4Q9H172 646 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 KLHL31Q9H511 634 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 PIF1Q9H611 641 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 MIEF1Q9NQG6 463 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 EVA1BQ9NVM1 165 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 ARMC1Q9NVT9 282 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 POMT2Q9UKY4 750 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 AP4S1Q9Y587 144 aa13.48□□□□□ -0.25
CUX1-209ENST00000487284 DHRS12A0PJE2 317 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 C1orf226A1L170 272 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 C4orf51C9J302 202 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 DUX1O43812 170 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 TMPRSS11DO60235 418 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 LDOC1O95751 146 aaPredicted RBP13.47□□□□□ -0.25
CUX1-209ENST00000487284 PNLIPP16233 465 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 GPX2P18283 190 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 DDCP20711 480 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 SSR2P43308 183 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 TSFMP43897 325 aaKnown RBP13.47□□□□□ -0.25
CUX1-209ENST00000487284 LSSP48449 732 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 GFERP55789 205 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 GPLD1P80108 840 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 TOR1AIP1Q5JTV8 583 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 FCRL6Q6DN72 434 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 ABHD17CQ6PCB6 329 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 FIGLAQ6QHK4 219 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 ZNF793Q6ZN11 406 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 ASCL5Q7RTU5 278 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 NAXDQ8IW45 347 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 MICU2Q8IYU8 434 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 LILRA2Q8N149 483 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 C10orf111Q8N326 155 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 FAM47BQ8NA70 645 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 SRFBP1Q8NEF9 429 aaKnown RBP13.47□□□□□ -0.25
CUX1-209ENST00000487284 IFI44Q8TCB0 444 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 NT5CQ8TCD5 201 aa13.47□□□□□ -0.25
CUX1-209ENST00000487284 CANT1Q8WVQ1 401 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms