RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TRPS1Q9UHF7 1281 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 ZNF225Q9UK10 706 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 FBXW2Q9UKT8 454 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 DAPP1Q9UN19 280 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 A0A1W2PQ72 361 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 RGS16O15492 202 aaPredicted RBP13.87□□□□□ -0.19
USP4-212ENST00000486549 ALPPP05187 535 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 HIST1H1TP22492 207 aaPredicted RBP13.87□□□□□ -0.19
USP4-212ENST00000486549 HNRNPFP52597 415 aaKnown RBP13.87□□□□□ -0.19
USP4-212ENST00000486549 NAGLUP54802 743 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 OR4D2P58180 307 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 ACTN3Q08043 901 aaPredicted RBP13.87□□□□□ -0.19
USP4-212ENST00000486549 KLRB1Q12918 225 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 LCP2Q13094 533 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 CFAP157Q5JU67 520 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 TCHHL1Q5QJ38 904 aaPredicted RBP13.87□□□□□ -0.19
USP4-212ENST00000486549 VWA5B1Q5TIE3 1220 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 OR4C11Q6IEV9 310 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 CLNKQ7Z7G1 428 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 KBTBD2Q8IY47 623 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 EFCAB3Q8N7B9 438 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 TEX19Q8NA77 164 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 TMEM52Q8NDY8 209 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 ADAMTS18Q8TE60 1221 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 SELENOMQ8WWX9 145 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 FAM111AQ96PZ2 611 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 HBEGFQ99075 208 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 SERPINI1Q99574 410 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 TUBB6Q9BUF5 446 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 LHPPQ9H008 270 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 GSTO2Q9H4Y5 243 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 ZNF552Q9H707 407 aaPredicted RBP13.87□□□□□ -0.19
USP4-212ENST00000486549 MLXIPLQ9NP71 852 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 NECTIN3Q9NQS3 549 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 PRDM9Q9NQV7 894 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 PRTFDC1Q9NRG1 225 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 MKS1Q9NXB0 559 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 MID2Q9UJV3 735 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 SNX6Q9UNH7 406 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 MRPS33Q9Y291 106 aaKnown RBP13.87□□□□□ -0.19
USP4-212ENST00000486549 STK38LQ9Y2H1 464 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 PLLPQ9Y342 182 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 ZNF451Q9Y4E5 1061 aa13.87□□□□□ -0.19
USP4-212ENST00000486549 BSNQ9UPA5 3926 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 A8MUA0 341 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 FOXE1O00358 373 aaPredicted RBP13.86□□□□□ -0.19
USP4-212ENST00000486549 KLHL41O60662 606 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 MLYCDO95822 493 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 PDYNP01213 254 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 PRR35P0CG20 571 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 CREB1P16220 341 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 CPN2P22792 545 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 HMOX2P30519 316 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 SOX8P57073 446 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 SLC13A2Q13183 592 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 SLAMF1Q13291 335 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 CUL3Q13618 768 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 RCN2Q14257 317 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 PCLAFQ15004 111 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 BTBD16Q32M84 506 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 PAPD4Q6PIY7 484 aaKnown RBP13.86□□□□□ -0.19
USP4-212ENST00000486549 HPS6Q86YV9 775 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 C10orf107Q8IVU9 208 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 SIRT6Q8N6T7 355 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 METTL6Q8TCB7 284 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 KCNA7Q96RP8 456 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 SMAD5Q99717 465 aaKnown RBP13.86□□□□□ -0.19
USP4-212ENST00000486549 WDR77Q9BQA1 342 aaPredicted RBP13.86□□□□□ -0.19
USP4-212ENST00000486549 MFRPQ9BY79 579 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 MID1IP1Q9NPA3 183 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 OXSMQ9NWU1 459 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 SLC17A7Q9P2U7 560 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 SLC12A4Q9UP95 1085 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 PCDHGB7Q9Y5F8 929 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 SPACA6W5XKT8 324 aa13.86□□□□□ -0.19
USP4-212ENST00000486549 MYOCOSA0A1B0GUC4 107 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 MANBAO00462 879 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 CYR61O00622 381 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 CLDN4O14493 209 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 EEDO75530 441 aaKnown RBP13.85□□□□□ -0.19
USP4-212ENST00000486549 SCELO95171 688 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 GBAP04062 536 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 SERPINA7P05543 415 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 ITGAMP11215 1152 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 BSGP35613 385 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 TSFMP43897 325 aaKnown RBP13.85□□□□□ -0.19
USP4-212ENST00000486549 PKNOX1P55347 436 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 DNAJB13P59910 316 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 TLE1Q04724 770 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 C10orf62Q5T681 223 aaPredicted RBP13.85□□□□□ -0.19
USP4-212ENST00000486549 AGAP7PQ5VUJ5 663 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 LIPMQ5VYY2 423 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 CYP20A1Q6UW02 462 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 FRMD7Q6ZUT3 714 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 NUDT13Q86X67 352 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 ZNF595Q8IYB9 648 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 BRIX1Q8TDN6 353 aaKnown RBP13.85□□□□□ -0.19
USP4-212ENST00000486549 TCP10LQ8TDR4 215 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 AGAP11Q8TF27 550 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 IMMP1LQ96LU5 166 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms