RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 RUNX2Q13950 521 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 E2F2Q14209 437 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 PCBP2Q15366 365 aaKnown RBP eCLIP12.07□□□□□ -0.486e-7■■■■■ 44.5
CHMP3-208ENST00000486404 TERF2Q15554 542 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 EIF2S3LQ2VIR3 472 aaKnown RBP12.07□□□□□ -0.48
CHMP3-208ENST00000486404 KHDRBS2Q5VWX1 349 aaKnown RBP12.07□□□□□ -0.48
CHMP3-208ENST00000486404 LIPJQ5W064 366 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 RPUSD3Q6P087 351 aaKnown RBP12.07□□□□□ -0.48
CHMP3-208ENST00000486404 METTL2BQ6P1Q9 378 aaKnown RBP12.07□□□□□ -0.48
CHMP3-208ENST00000486404 CLEC18BQ6UXF7 455 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 SCUBE1Q8IWY4 988 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 GSPT2Q8IYD1 628 aaKnown RBP12.07□□□□□ -0.48
CHMP3-208ENST00000486404 LGI4Q8N135 537 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 PLD6Q8N2A8 252 aaKnown RBP12.07□□□□□ -0.48
CHMP3-208ENST00000486404 KIF2BQ8N4N8 673 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 HORMAD2Q8N7B1 307 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 AMER2Q8N7J2 671 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 CLEC18CQ8NCF0 446 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 ST6GALNAC3Q8NDV1 305 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 HUS1BQ8NHY5 278 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 MTBPQ96DY7 904 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 GPR78Q96P69 363 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 CSF3RQ99062 836 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 MTERF1Q99551 399 aaKnown RBP12.07□□□□□ -0.48
CHMP3-208ENST00000486404 CCDC77Q9BR77 488 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 MRPL46Q9H2W6 279 aaKnown RBP12.07□□□□□ -0.48
CHMP3-208ENST00000486404 IPPKQ9H8X2 491 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 LYRM4Q9HD34 91 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 DMRT3Q9NQL9 472 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 ANKRD10Q9NXR5 420 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 DAPP1Q9UN19 280 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 PCDHGA11Q9Y5H2 935 aa12.07□□□□□ -0.48
CHMP3-208ENST00000486404 RELNP78509 3460 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 SPTBN1Q01082 2364 aaKnown RBP12.06□□□□□ -0.48
CHMP3-208ENST00000486404 TRBV11-1A0A0K0K1C0 115 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 BLACEA4D250 179 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 LRRC14BA6NHZ5 514 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 STX16-NPEPL1H3BU86 382 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 RTCAO00442 366 aaKnown RBP12.06□□□□□ -0.48
CHMP3-208ENST00000486404 E2F3O00716 465 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 STX16O14662 325 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 RIPK2O43353 540 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 RASAL1O95294 804 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 SIX3O95343 332 aaPredicted RBP12.06□□□□□ -0.48
CHMP3-208ENST00000486404 TBX6O95947 436 aaPredicted RBP12.06□□□□□ -0.48
CHMP3-208ENST00000486404 CRYABP02511 175 aaKnown RBP12.06□□□□□ -0.48
CHMP3-208ENST00000486404 CD46P15529 392 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 HIST1H1TP22492 207 aaPredicted RBP12.06□□□□□ -0.48
CHMP3-208ENST00000486404 CPN2P22792 545 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 ATP5A1P25705 553 aaKnown RBP12.06□□□□□ -0.48
CHMP3-208ENST00000486404 PIK3CBP42338 1070 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 CCNG1P51959 295 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 HNRNPFP52597 415 aaKnown RBP12.06□□□□□ -0.48
CHMP3-208ENST00000486404 TUBA3CQ13748 450 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 OR1C1Q15619 314 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 CPSF6Q16630 551 aaKnown RBP eCLIP12.06□□□□□ -0.48
CHMP3-208ENST00000486404 ZNF766Q5HY98 468 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 TEX35Q5T0J7 233 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 TTC19Q6DKK2 380 aaPredicted RBP12.06□□□□□ -0.48
CHMP3-208ENST00000486404 H3F3CQ6NXT2 135 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 TUBA3EQ6PEY2 450 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 ACOT4Q8N9L9 421 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 B3GNT7Q8NFL0 401 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 SSC4DQ8WTU2 575 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 FAR1Q8WVX9 515 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 RGMAQ96B86 450 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 PHF21BQ96EK2 531 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 VMP1Q96GC9 406 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 DEFB126Q9BYW3 111 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 OR51B5Q9H339 312 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 ADAP2Q9NPF8 381 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 ZNF358Q9NW07 568 aa12.06□□□□□ -0.48
CHMP3-208ENST00000486404 PSMC3IPQ9P2W1 217 aaPredicted RBP12.06□□□□□ -0.48
CHMP3-208ENST00000486404 SPTAN1Q13813 2472 aaKnown RBP12.06□□□□□ -0.48
CHMP3-208ENST00000486404 IQANK1A0A1B0GTG1 560 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 H0YIV9 168 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 CLDN9O95484 217 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 CBX6O95503 412 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 CLCN2P51788 898 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 RPS13P62277 151 aaKnown RBP12.05□□□□□ -0.48
CHMP3-208ENST00000486404 PCDH1Q08174 1060 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 ELAVL1Q15717 326 aaKnown RBP12.05□□□□□ -0.48
CHMP3-208ENST00000486404 ZNF793Q6ZN11 406 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 RPS19BP1Q86WX3 136 aaKnown RBP12.05□□□□□ -0.48
CHMP3-208ENST00000486404 TMEM178AQ8NBL3 297 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 FAM98AQ8NCA5 519 aaKnown RBP12.05□□□□□ -0.48
CHMP3-208ENST00000486404 TMEM52Q8NDY8 209 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 ELP5Q8TE02 316 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 BARD1Q99728 777 aaKnown RBP12.05□□□□□ -0.48
CHMP3-208ENST00000486404 MAPKAP1Q9BPZ7 522 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 SLX1AQ9BQ83 275 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 MRPL57Q9BQC6 102 aaKnown RBP12.05□□□□□ -0.48
CHMP3-208ENST00000486404 CDCP1Q9H5V8 836 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 NOL11Q9H8H0 719 aaKnown RBP12.05□□□□□ -0.48
CHMP3-208ENST00000486404 PRDM7Q9NQW5 492 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 KLHL1Q9NR64 748 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 PHF11Q9UIL8 331 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 PCTPQ9UKL6 214 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 FBXW2Q9UKT8 454 aa12.05□□□□□ -0.48
CHMP3-208ENST00000486404 CLCA3PQ9Y6N3 262 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms