RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 WDR55Q9H6Y2 383 aaPredicted RBP16.13■□□□□ 0.17
VIM-205ENST00000485947 SEMA3GQ9NS98 782 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 SLC22A11Q9NSA0 550 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 TMEM184CQ9NVA4 438 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 GPR83Q9NYM4 423 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 ADGRE2Q9UHX3 823 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 ZNF490Q9ULM2 529 aaPredicted RBP16.13■□□□□ 0.17
VIM-205ENST00000485947 HEATR5BQ9P2D3 2071 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 SNRNP200O75643 2136 aaKnown RBP16.12■□□□□ 0.17
VIM-205ENST00000485947 A0A0J9YVX5 310 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 GOLGA8QA0A0J9YX86 632 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 GOLGA8OA6NCC3 632 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 VSTM2BA6NLU5 285 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 NPIPB8E9PQR5 432 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 GOLGA8NF8WBI6 632 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 DNAJB5O75953 348 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 ALPPP05187 535 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 LINC00032P0C843 101 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 OTX2P32243 289 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 FOXK1P85037 733 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 ABRAXAS2Q15018 415 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 NKG7Q16617 165 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 NXNQ6DKJ4 435 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 OGFOD2Q6N063 350 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 LARP4Q71RC2 724 aaKnown RBP eCLIP16.12■□□□□ 0.17
VIM-205ENST00000485947 TRPM8Q7Z2W7 1104 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 TBC1D19Q8N5T2 526 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 RERGQ96A58 199 aaPredicted RBP16.12■□□□□ 0.17
VIM-205ENST00000485947 TUBGCP3Q96CW5 907 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 PPP1R36Q96LQ0 422 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 PPP3R2Q96LZ3 170 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 C3orf30Q96M34 536 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 LRRC37BQ96QE4 947 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 BRF2Q9HAW0 419 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 ZNF304Q9HCX3 659 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 SLC6A20Q9NP91 592 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 CUEDC1Q9NWM3 386 aaPredicted RBP16.12■□□□□ 0.17
VIM-205ENST00000485947 P4HTMQ9NXG6 502 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 PPT2Q9UMR5 302 aa16.12■□□□□ 0.17
VIM-205ENST00000485947 IGLV3-12A0A075B6K2 115 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 IGKV1-8A0A0C4DH67 115 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 H0YGG7 62 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 PDYNP01213 254 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 UMODP07911 640 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 PRR35P0CG20 571 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 LBPP18428 481 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 PRPH2P23942 346 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 GSTM2P28161 218 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 GRK3P35626 688 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 ARF3P61204 181 aaPredicted RBP16.11■□□□□ 0.17
VIM-205ENST00000485947 OCA2Q04671 838 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 FAM53BQ14153 422 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 IMPG1Q17R60 797 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 ATP6AP1LQ52LC2 224 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 SPDYAQ5MJ70 313 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 FAM91A1Q658Y4 838 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 FRMPD2BQ6IN97 320 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 C6orf89Q6UWU4 347 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 TMIGD1Q6UXZ0 262 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 FDCSPQ8NFU4 85 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 TTLQ8NG68 377 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 OR7G3Q8NG95 312 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 OR2A5Q96R48 311 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 SPSB2Q99619 263 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 SARGQ9BW04 601 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 MYLK2Q9H1R3 596 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 ATP13A2Q9NQ11 1180 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 ZNF282Q9UDV7 671 aaPredicted RBP16.11■□□□□ 0.17
VIM-205ENST00000485947 FLNCQ14315 2725 aa16.11■□□□□ 0.17
VIM-205ENST00000485947 SPTAN1Q13813 2472 aaKnown RBP16.11■□□□□ 0.17
VIM-205ENST00000485947 LOC105369274A0A096LPK9 316 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 LOC102723532A0A0G2JNH3 316 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 TRBC2A0A5B9 178 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 E9PBE3 544 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 K7EM74 188 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 FOXE1O00358 373 aaPredicted RBP16.1■□□□□ 0.17
VIM-205ENST00000485947 FCHO1O14526 889 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 CNOT3O75175 753 aaKnown RBP16.1■□□□□ 0.17
VIM-205ENST00000485947 RSL1D1O76021 490 aaKnown RBP16.1■□□□□ 0.17
VIM-205ENST00000485947 PIK3CBP42338 1070 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 CD97P48960 835 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 CSNK1G2P78368 415 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 AIMP2Q13155 320 aaKnown RBP16.1■□□□□ 0.17
VIM-205ENST00000485947 MAD2L1Q13257 205 aaPredicted RBP16.1■□□□□ 0.17
VIM-205ENST00000485947 MYBPC3Q14896 1274 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 SLC9A5Q14940 896 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 NR6A1Q15406 480 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 NDUFA9Q16795 377 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 COLEC12Q5KU26 742 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 IGFL3Q6UXB1 125 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 Q6ZSR9 355 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 CHSY3Q70JA7 882 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 SPATA19Q7Z5L4 167 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 PPP1R32Q7Z5V6 425 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 MTDHQ86UE4 582 aaKnown RBP16.1■□□□□ 0.17
VIM-205ENST00000485947 PARP9Q8IXQ6 854 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 OR4N4Q8N0Y3 316 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 CSNK1A1LQ8N752 337 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 TM9SF4Q92544 642 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 METTL2AQ96IZ6 378 aaKnown RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms