RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ABHD17BQ5VST6 288 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 HHATQ5VTY9 493 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 FAM69BQ5VUD6 431 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 ZNF517Q6ZMY9 492 aaPredicted RBP7.59□□□□□ -1.19
USP40-216ENST00000485943 GPRIN3Q6ZVF9 776 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 NDUFAF7Q7L592 441 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 ZNF605Q86T29 641 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 NUDT13Q86X67 352 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 PTRH1Q86Y79 214 aaKnown RBP7.59□□□□□ -1.19
USP40-216ENST00000485943 HPS6Q86YV9 775 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 APLFQ8IW19 511 aaPredicted RBP7.59□□□□□ -1.19
USP40-216ENST00000485943 ANKRD53Q8N9V6 530 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 FAM47BQ8NA70 645 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 OR7G3Q8NG95 312 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 HUS1BQ8NHY5 278 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 CDC26Q8NHZ8 85 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 METTL6Q8TCB7 284 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 UTP15Q8TED0 518 aaKnown RBP7.59□□□□□ -1.19
USP40-216ENST00000485943 AENQ8WTP8 325 aaKnown RBP7.59□□□□□ -1.19
USP40-216ENST00000485943 SNRNP27Q8WVK2 155 aaKnown RBP7.59□□□□□ -1.19
USP40-216ENST00000485943 C8orf44Q96CB5 159 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 THOC3Q96J01 351 aaKnown RBP7.59□□□□□ -1.19
USP40-216ENST00000485943 F2RL3Q96RI0 385 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 TUBB6Q9BUF5 446 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 SARGQ9BW04 601 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 FAIM2Q9BWQ8 316 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 NPLQ9BXD5 320 aaPredicted RBP7.59□□□□□ -1.19
USP40-216ENST00000485943 LHPPQ9H008 270 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.59□□□□□ -1.19
USP40-216ENST00000485943 OR51B5Q9H339 312 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 KCNK13Q9HB14 408 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 MID1IP1Q9NPA3 183 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 PRTFDC1Q9NRG1 225 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 PNO1Q9NRX1 252 aaKnown RBP7.59□□□□□ -1.19
USP40-216ENST00000485943 GIMAP4Q9NUV9 329 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 NKIRAS1Q9NYS0 192 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 COPS7AQ9UBW8 275 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 CLCA3PQ9Y6N3 262 aa7.59□□□□□ -1.19
USP40-216ENST00000485943 DMXL2Q8TDJ6 3036 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 GNG14A0A1W2PPG7 69 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 HMX2A2RU54 273 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 LRIT2A6NDA9 550 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 A8MUA0 341 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 A8MUI8 341 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 E2F3O00716 465 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 FOXS1O43638 330 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 SLC28A2O43868 658 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 DNAJB5O75953 348 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 SEC24DO94855 1032 aaPredicted RBP7.58□□□□□ -1.2
USP40-216ENST00000485943 OR4F21O95013 312 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 WISP3O95389 354 aaPredicted RBP7.58□□□□□ -1.2
USP40-216ENST00000485943 BMP10O95393 424 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 ENO1P06733 434 aaKnown RBP7.58□□□□□ -1.2
USP40-216ENST00000485943 CYC1P08574 325 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 IMPDH1P20839 514 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 CERS1P27544 350 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 MAGEA12P43365 314 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 PRKAA2P54646 552 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 PKNOX1P55347 436 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 RPS13P62277 151 aaKnown RBP7.58□□□□□ -1.2
USP40-216ENST00000485943 KLRB1Q12918 225 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 LCP2Q13094 533 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 SLAMF1Q13291 335 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 CCNYL2Q5T2Q4 361 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 VWA5B1Q5TIE3 1220 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 KHDRBS2Q5VWX1 349 aaKnown RBP7.58□□□□□ -1.2
USP40-216ENST00000485943 LIPMQ5VYY2 423 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 FRG2Q64ET8 278 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 ZNF385CQ66K41 422 aaPredicted RBP7.58□□□□□ -1.2
USP40-216ENST00000485943 CPZQ66K79 652 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 OR4C11Q6IEV9 310 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 ZYG11AQ6WRX3 759 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 COX15Q7KZN9 410 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 PRSS41Q7RTY9 318 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 CPEB2Q7Z5Q1 589 aaKnown RBP7.58□□□□□ -1.2
USP40-216ENST00000485943 DTWD1Q8N5C7 304 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 CDYL2Q8N8U2 506 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 OR4F6Q8NGB9 312 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 MS4A6EQ96DS6 147 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 TM4SF19Q96DZ7 209 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 MOCOSQ96EN8 888 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 FAM111AQ96PZ2 611 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 FRG2BQ96QU4 278 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 TXLNGYQ9BZA5 131 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 TGIF2Q9GZN2 237 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 VN1R1Q9GZP7 353 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 SPNS1Q9H2V7 528 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 RRAGDQ9NQL2 400 aaPredicted RBP7.58□□□□□ -1.2
USP40-216ENST00000485943 LYARQ9NX58 379 aaKnown RBP7.58□□□□□ -1.2
USP40-216ENST00000485943 PTGFRNQ9P2B2 879 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 TRPS1Q9UHF7 1281 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 PCTPQ9UKL6 214 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 RALYQ9UKM9 306 aaKnown RBP7.58□□□□□ -1.2
USP40-216ENST00000485943 PSME2Q9UL46 239 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 ZNF490Q9ULM2 529 aaPredicted RBP7.58□□□□□ -1.2
USP40-216ENST00000485943 TP53TG5Q9Y2B4 290 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 MRPS2Q9Y399 296 aaKnown RBP7.58□□□□□ -1.2
USP40-216ENST00000485943 RNF11Q9Y3C5 154 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 MMACHCQ9Y4U1 282 aa7.58□□□□□ -1.2
USP40-216ENST00000485943 PCDHGB7Q9Y5F8 929 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms