RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SYT16Q17RD7 645 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 CRB2Q5IJ48 1285 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 MFSD4BQ5TF39 518 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 FAAH2Q6GMR7 532 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 SBSNQ6UWP8 590 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 IGFL2Q6UWQ7 119 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 ISLR2Q6UXK2 745 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 Q6ZS92 163 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 PRSS41Q7RTY9 318 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 MAATS1Q7Z4T9 603 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 VN1R4Q7Z5H5 301 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 ASPGQ86U10 573 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 CUZD1Q86UP6 607 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 ZC3H7AQ8IWR0 971 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 ZBED8Q8IZ13 594 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 NKAPQ8N5F7 415 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 CISD2Q8N5K1 135 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 MFSD9Q8NBP5 474 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 ABHD11Q8NFV4 315 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 OR9A4Q8NGU2 314 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 DNAJB14Q8TBM8 379 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 PYROXD1Q8WU10 500 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 SLC13A3Q8WWT9 602 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 METTL21AQ8WXB1 218 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 ANKRD7Q92527 254 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 PYCR2Q96C36 320 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 TM4SF19Q96DZ7 209 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 MRRFQ96E11 262 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 PDLIM5Q96HC4 596 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 VPS39Q96JC1 886 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 CNDP1Q96KN2 507 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 LMF1Q96S06 567 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 POPDC3Q9HBV1 291 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 ZBTB20Q9HC78 741 aaPredicted RBP6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 ANKHQ9HCJ1 492 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 RIC8BQ9NVN3 520 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 MOCS1Q9NZB8 636 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 NTMQ9P121 344 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 WHRNQ9P202 907 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 MRPS2Q9Y399 296 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 PSAT1Q9Y617 370 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 ICE1Q9Y2F5 2266 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 LRRK2Q5S007 2527 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 HECTD1Q9ULT8 2610 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 TRBC2A0A5B9 178 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 DYTNA2CJ06 578 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 NPEPPSL1A6NEC2 478 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 SGK494L7N484 410 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 EIF3HO15372 352 aaKnown RBP eCLIP6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 NDUFS4O43181 175 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 OR1F1O43749 312 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 LCMT2O60294 686 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 AGFG2O95081 481 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 SERPINA7P05543 415 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 UQCRHP07919 91 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 PRR35P0CG20 571 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 C8orf89P0DMQ9 161 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 ICAM2P13598 275 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 IL1RNP18510 177 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 IL10P22301 178 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 GDF5P43026 501 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 TSFMP43897 325 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 AGTR2P50052 363 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 HNMTP50135 292 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 PGGT1BP53609 377 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 SLC12A2P55011 1212 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 TAS2R39P59534 338 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 SKP1P63208 163 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 ARG2P78540 354 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 CDKL1Q00532 357 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 MEF2AQ02078 507 aaPredicted RBP6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 EEF1A2Q05639 463 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 C2orf54Q08AI8 447 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 CDC16Q13042 620 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 MRPL49Q13405 166 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 PWP1Q13610 501 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 CSHL1Q14406 222 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 ZNF169Q14929 603 aaPredicted RBP6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 HERC3Q15034 1050 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 PPP1R3AQ16821 1122 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 MINDY4Q4G0A6 757 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 B3GNTL1Q67FW5 361 aaPredicted RBP6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 NIPAL1Q6NVV3 410 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 TMEM205Q6UW68 189 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 TMEM207Q6UWW9 146 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 LINC00696Q6ZRV3 163 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 FRA10AC1Q70Z53 315 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 LINC00482Q8N8I6 264 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 SPATA4Q8NEY3 305 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 OR4K1Q8NGD4 311 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 OR51Q1Q8NH59 317 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 ZCCHC10Q8TBK6 192 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 BRIX1Q8TDN6 353 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 SLC5A11Q8WWX8 675 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 CDKL2Q92772 493 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 NEIL2Q969S2 332 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 C19orf60Q96EN9 201 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 TSPAN17Q96FV3 270 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 OR4K3Q96R72 315 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 EGFL8Q99944 293 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms