RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 SCELO95171 688 aa18.12■□□□□ 0.49
USP40-207ENST00000450940 CERS1P27544 350 aa18.12■□□□□ 0.49
USP40-207ENST00000450940 TPP2P29144 1249 aaPredicted RBP18.12■□□□□ 0.49
USP40-207ENST00000450940 TYK2P29597 1187 aa18.12■□□□□ 0.49
USP40-207ENST00000450940 MAGEA12P43365 314 aa18.12■□□□□ 0.49
USP40-207ENST00000450940 ALDH18A1P54886 795 aaKnown RBP18.12■□□□□ 0.49
USP40-207ENST00000450940 RCN2Q14257 317 aa18.12■□□□□ 0.49
USP40-207ENST00000450940 SPINK14Q6IE38 97 aa18.12■□□□□ 0.49
USP40-207ENST00000450940 GRHL2Q6ISB3 625 aa18.12■□□□□ 0.49
USP40-207ENST00000450940 METTL2BQ6P1Q9 378 aaKnown RBP18.12■□□□□ 0.49
USP40-207ENST00000450940 HORMAD2Q8N7B1 307 aa18.12■□□□□ 0.49
USP40-207ENST00000450940 SLC44A1Q8WWI5 657 aa18.12■□□□□ 0.49
USP40-207ENST00000450940 RELTQ969Z4 430 aa18.12■□□□□ 0.49
USP40-207ENST00000450940 ANKRD10Q9NXR5 420 aa18.12■□□□□ 0.49
USP40-207ENST00000450940 ADGRE2Q9UHX3 823 aa18.12■□□□□ 0.49
USP40-207ENST00000450940 CLDN1O95832 211 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 SP1P08047 785 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 CTAGE8P0CG41 777 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 CD46P15529 392 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 ATP5A1P25705 553 aaKnown RBP18.11■□□□□ 0.49
USP40-207ENST00000450940 PCBP2Q15366 365 aaKnown RBP eCLIP18.11■□□□□ 0.49
USP40-207ENST00000450940 ZNF468Q5VIY5 522 aaPredicted RBP18.11■□□□□ 0.49
USP40-207ENST00000450940 LIPJQ5W064 366 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 ZNF793Q6ZN11 406 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 CHSY3Q70JA7 882 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 MAMDC2Q7Z304 686 aaPredicted RBP18.11■□□□□ 0.49
USP40-207ENST00000450940 ZNF227Q86WZ6 799 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 CTAGE4Q8IX94 777 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 TEX9Q8N6V9 391 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 FAM47BQ8NA70 645 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 TMEM178AQ8NBL3 297 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 ZNF592Q92610 1267 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 CMTM7Q96FZ5 175 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 CSF3RQ99062 836 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 FMO2Q99518 471 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 DEFB126Q9BYW3 111 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 COPS7BQ9H9Q2 264 aaPredicted RBP18.11■□□□□ 0.49
USP40-207ENST00000450940 ADAP2Q9NPF8 381 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 LRFN1Q9P244 771 aa18.11■□□□□ 0.49
USP40-207ENST00000450940 NBPF19A0A087WUL8 3843 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 CENPEQ02224 2701 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 A0A1B0GUH1 482 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 KIF2AO00139 706 aaPredicted RBP18.1■□□□□ 0.49
USP40-207ENST00000450940 MYO1DO94832 1006 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 EEF1DP29692 281 aaKnown RBP18.1■□□□□ 0.49
USP40-207ENST00000450940 PIK3CBP42338 1070 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 CLCN2P51788 898 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 PER3P56645 1201 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 KCNK10P57789 538 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 PMP22Q01453 160 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 SLC13A2Q13183 592 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 UAP1Q16222 522 aaPredicted RBP18.1■□□□□ 0.49
USP40-207ENST00000450940 PFKFB4Q16877 469 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 DEPDC1Q5TB30 811 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 KHDRBS2Q5VWX1 349 aaKnown RBP18.1■□□□□ 0.49
USP40-207ENST00000450940 SLC25A25Q6KCM7 469 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 KLC3Q6P597 504 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 GFRALQ6UXV0 394 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 ACOT4Q8N9L9 421 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 IFT81Q8WYA0 676 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 VMP1Q96GC9 406 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 HES7Q9BYE0 225 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 ZNF223Q9UK11 482 aaPredicted RBP18.1■□□□□ 0.49
USP40-207ENST00000450940 MYO7BQ6PIF6 2116 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 CROCCQ5TZA2 2017 aa18.1■□□□□ 0.49
USP40-207ENST00000450940 UGDHO60701 494 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 WISP2O76076 250 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 ACSL3O95573 720 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 TGFB1P01137 390 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 GFAPP14136 432 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 HIST1H1TP22492 207 aaPredicted RBP18.09■□□□□ 0.49
USP40-207ENST00000450940 PPP2R1BP30154 601 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 CYB561P49447 251 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 SERPINB9P50453 376 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 ST13P50502 369 aaKnown RBP18.09■□□□□ 0.49
USP40-207ENST00000450940 HLCSP50747 726 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 ARFIP1P53367 373 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 OC90Q02509 493 aaPredicted RBP18.09■□□□□ 0.49
USP40-207ENST00000450940 ELAVL1Q15717 326 aaKnown RBP18.09■□□□□ 0.49
USP40-207ENST00000450940 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.09■□□□□ 0.49
USP40-207ENST00000450940 TECRLQ5HYJ1 363 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 HIST2H2BCQ6DN03 193 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 PLD6Q8N2A8 252 aaKnown RBP18.09■□□□□ 0.49
USP40-207ENST00000450940 MAPKAP1Q9BPZ7 522 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 KLHL1Q9NR64 748 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 PNO1Q9NRX1 252 aaKnown RBP18.09■□□□□ 0.49
USP40-207ENST00000450940 PSD3Q9NYI0 1048 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 SEC14L3Q9UDX4 400 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 VTI1BQ9UEU0 232 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 ZNF180Q9UJW8 692 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 PCDHGA11Q9Y5H2 935 aa18.09■□□□□ 0.49
USP40-207ENST00000450940 TNPO3Q9Y5L0 923 aaKnown RBP18.09■□□□□ 0.49
USP40-207ENST00000450940 CRYBG3Q68DQ2 2970 aa18.08■□□□□ 0.49
USP40-207ENST00000450940 A1L4Q6 167 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 H0YIV9 168 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 RTCAO00442 366 aaKnown RBP18.08■□□□□ 0.48
USP40-207ENST00000450940 FCHO1O14526 889 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 NME2P1O60361 137 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 UNC5CO95185 931 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 INHBAP08476 426 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms