RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SHROOM1Q2M3G4 852 aaPredicted RBP3.83□□□□□ -1.8
VPS29-202ENST00000447578 QRICH1Q2TAL8 776 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 ZNF672Q499Z4 452 aaPredicted RBP3.83□□□□□ -1.8
VPS29-202ENST00000447578 CCDC122Q5T0U0 273 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 NDUFAF5Q5TEU4 345 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 OR7E24Q6IFN5 339 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 CENPPQ6IPU0 288 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 GTF2H2CQ6P1K8 395 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 WDR59Q6PJI9 974 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 PRSS42Q7Z5A4 293 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 CTAGE6Q86UF2 777 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 ANKRD46Q86W74 232 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 SERPINA12Q8IW75 414 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 CTAGE4Q8IX94 777 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 AQP12AQ8IXF9 295 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 C1orf87Q8N0U7 546 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 CPSF7Q8N684 471 aaKnown RBP3.83□□□□□ -1.8
VPS29-202ENST00000447578 AMER3Q8N944 861 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 L3MBTL4Q8NA19 623 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 URGCPQ8TCY9 931 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 SLC20A1Q8WUM9 679 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 SLC13A3Q8WWT9 602 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 CDCA5Q96FF9 252 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 PGM2Q96G03 612 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 SCMH1Q96GD3 660 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 ZNF560Q96MR9 790 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 GDAP1L1Q96MZ0 367 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 PANX3Q96QZ0 392 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 ATG101Q9BSB4 218 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 P2RY12Q9H244 342 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 HAUS4Q9H6D7 363 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 PSTPIP2Q9H939 334 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 NHEJ1Q9H9Q4 299 aaPredicted RBP3.83□□□□□ -1.8
VPS29-202ENST00000447578 TRPC7Q9HCX4 862 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 TMEM30AQ9NV96 361 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 PANK4Q9NVE7 773 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 OCIAD1Q9NX40 245 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 KCNS2Q9ULS6 477 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 GPR132Q9UNW8 380 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 PIN4Q9Y237 131 aaKnown RBP3.83□□□□□ -1.8
VPS29-202ENST00000447578 TMED3Q9Y3Q3 217 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 HBS1LQ9Y450 684 aaKnown RBP3.83□□□□□ -1.8
VPS29-202ENST00000447578 CKAP5Q14008 2032 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 MYH13Q9UKX3 1938 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 C10orf71Q711Q0 1435 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 TEX13DA0A0J9YY54 714 aaPredicted RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 ZCWPW2A0A1B0GU75 182 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 ILVBLA1L0T0 632 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 MACROD2A1Z1Q3 448 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 E9PMD0 336 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 F5H6K3 240 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 POLR3GO15318 223 aaPredicted RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 ATP8B1O43520 1251 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 ECE2O60344 883 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 WDR1O75083 606 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 ATP6AP2O75787 350 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 KDM4BO94953 1096 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 GUCA1CO95843 209 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 NDUFB10O96000 172 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 CGAP01215 116 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 ATP1A1P05023 1023 aaKnown RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 ALPPP05187 535 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 UMODP07911 640 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 RHOXF2BP0C7M4 288 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 STAG3L1P0CL83 205 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 ALPPL2P10696 532 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 HAPLN1P10915 354 aaPredicted RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 CKMT2P17540 419 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 CBLP22681 906 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 PIK3R1P27986 724 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 MNDAP41218 407 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 ARCN1P48444 511 aaKnown RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 SMSP52788 366 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 ATXN3P54252 364 aaPredicted RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 RPS18P62269 152 aaKnown RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 FKBP1AP62942 108 aaKnown RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 EEF1A1P68104 462 aaKnown RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 LRRC63Q05C16 580 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 RUNX1T1Q06455 604 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 SULT2A1Q06520 285 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 CKAP4Q07065 602 aaKnown RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 KLRC3Q07444 240 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 TRAF2Q12933 501 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 SPA17Q15506 151 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 CA9Q16790 459 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 CCDC40Q4G0X9 1142 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 EEF1A1P5Q5VTE0 462 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 RHBDF2Q6PJF5 856 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 BTNL8Q6UX41 500 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 PLXDC2Q6UX71 529 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 TMEM179Q6ZVK1 233 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 GPBP1Q86WP2 473 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 MEX3DQ86XN8 651 aaKnown RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 NELFCDQ8IXH7 590 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 CCDC65Q8IXS2 484 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 KLHDC8AQ8IYD2 350 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 MYOCDQ8IZQ8 938 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 MUC20Q8N307 709 aaPredicted RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 BMPERQ8N8U9 685 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 RASGEF1AQ8N9B8 481 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms