RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CDCP1Q9H5V8 836 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 RANGRFQ9HD47 186 aaPredicted RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 NDRG4Q9ULP0 352 aaKnown RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 RALGAPA2Q2PPJ7 1873 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 TNFSF8P32971 234 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 GPC1P35052 558 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 MAGEA11P43364 429 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 CCT3P49368 545 aaKnown RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 RGS6P49758 472 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 CLDN2P57739 230 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 CDK6Q00534 326 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 TBRG1Q3YBR2 411 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 CEACAM20Q6UY09 585 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 COMMD6Q7Z4G1 85 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 TRIM46Q7Z4K8 759 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 TMEM150AQ86TG1 271 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 GLB1L3Q8NCI6 653 aaPredicted RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 VPS37AQ8NEZ2 397 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 USP7Q93009 1102 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 DIRAS2Q96HU8 199 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 COL21A1Q96P44 957 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 C2orf92A0A1B0GVN3 265 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 SLC16A6O15403 523 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 EOMESO95936 686 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 HPRP00739 348 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 PRPS1L1P21108 318 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 CASP3P42574 277 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 NRIP1P48552 1158 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 ELP6Q0PNE2 266 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 GRIK2Q13002 908 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 HNRNPA0Q13151 305 aaKnown RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 GPNMBQ14956 572 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 SMARCD3Q6STE5 483 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 LYPD8Q6UX82 237 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 ASB18Q6ZVZ8 466 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 TECPR1Q7Z6L1 1165 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 GALNT7Q86SF2 657 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 LACC1Q8IV20 430 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 SHISA5Q8N114 240 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 DNAJC22Q8N4W6 341 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 AMER3Q8N944 861 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 PCSK9Q8NBP7 692 aaKnown RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 GALNT6Q8NCL4 622 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 ZNF461Q8TAF7 563 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 S100ZQ8WXG8 99 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 ASB11Q8WXH4 323 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 AP2M1Q96CW1 435 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 RDH12Q96NR8 316 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 ARPC5LQ9BPX5 153 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 HTATIP2Q9BUP3 242 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 TMED9Q9BVK6 235 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 HDHD5Q9BXW7 423 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 NMNAT1Q9HAN9 279 aaPredicted RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 MRPL17Q9NRX2 175 aaKnown RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 ASF1AQ9Y294 204 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 MRPS7Q9Y2R9 242 aaKnown RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 SPIN1Q9Y657 262 aaPredicted RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 TRBV5-3A0A0A0MS03 114 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 ZC3H12DA2A288 527 aaKnown RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 ZNF821O75541 412 aaPredicted RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 PRKACBP22694 351 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 MAN2A2P49641 1150 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 EPHB3P54753 998 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 TBPL1P62380 186 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 DEFB103AP81534 67 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 IFITM2Q01629 132 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 SEC23BQ15437 767 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 C5orf22Q49AR2 442 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 SYT6Q5T7P8 510 aaPredicted RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 FCRLBQ6BAA4 426 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 RAET1GQ6H3X3 334 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 KIAA1161Q6NSJ0 714 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 PRSS48Q7RTY5 328 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 TSPYL5Q86VY4 417 aaPredicted RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 CALHM3Q86XJ0 350 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 RASGEF1AQ8N9B8 481 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 PMEPA1Q969W9 287 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 CMTM7Q96FZ5 175 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 DEFB118Q96PH6 123 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 TMEM246Q9BRR3 403 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 NTMT1Q9BV86 223 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 C1QTNF3Q9BXJ4 246 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 RACGAP1Q9H0H5 632 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 WSB2Q9NYS7 404 aaPredicted RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 TRPS1Q9UHF7 1281 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 LSM7Q9UK45 103 aaKnown RBP8.27□□□□□ -1.09
USP40-203ENST00000427112 ITGB1BP2Q9UKP3 347 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 RIMKLBQ9ULI2 386 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 PCDHB11Q9Y5F2 797 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 BRWD1Q9NSI6 2320 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 A0A1W2PQ09 198 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 METTL15A6NJ78 407 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 FAM183AA6NL82 134 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 CLCA1A8K7I4 914 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 H7BY64 318 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 H7C4K7 107 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 TEX28O15482 410 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 FZD6O60353 706 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 MMP20O60882 483 aa8.27□□□□□ -1.09
USP40-203ENST00000427112 C7P10643 843 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms