RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 RAB25P57735 213 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 ZNF91Q05481 1191 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 ANGPT1Q15389 498 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 CYP27C1Q4G0S4 372 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 FRG2Q64ET8 278 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 ZNF730Q6ZMV8 503 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 ANKS3Q6ZW76 656 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 LRRC70Q7Z2Q7 622 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 ZNF680Q8NEM1 530 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 AKAP1Q92667 903 aaKnown RBP eCLIP10.24□□□□□ -0.77
USP54-204ENST00000422491 FRG2BQ96QU4 278 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 TCF25Q9BQ70 676 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 NMNAT1Q9HAN9 279 aaPredicted RBP10.24□□□□□ -0.77
USP54-204ENST00000422491 C11orf16Q9NQ32 467 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 COQ3Q9NZJ6 369 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 DNMT3AQ9Y6K1 912 aaPredicted RBP10.24□□□□□ -0.77
USP54-204ENST00000422491 SMIM30A4D0T7 59 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 BET1O15155 118 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 FABP7O15540 132 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 GADD45GO95257 159 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 CPEP16870 476 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 SLC6A4P31645 630 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 ETV3P41162 512 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 SOX9P48436 509 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 RPIAP49247 311 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 PSEN2P49810 448 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 STK19P49842 368 aaPredicted RBP10.24□□□□□ -0.77
USP54-204ENST00000422491 CPT1AP50416 773 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 MRPL28Q13084 256 aaKnown RBP10.24□□□□□ -0.77
USP54-204ENST00000422491 ELOAQ14241 798 aaKnown RBP10.24□□□□□ -0.77
USP54-204ENST00000422491 NFE2L1Q14494 772 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 GANABQ14697 944 aaKnown RBP10.24□□□□□ -0.77
USP54-204ENST00000422491 DALRD3Q5D0E6 543 aaKnown RBP10.24□□□□□ -0.77
USP54-204ENST00000422491 COX20Q5RI15 118 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 ANKRD54Q6NXT1 300 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 CNIH2Q6PI25 160 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 SDR16C5Q8N3Y7 309 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 TOR1AIP2Q8NFQ8 470 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 TMEM203Q969S6 136 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 SUSD3Q96L08 255 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 TMEM43Q9BTV4 400 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 ZSCAN5AQ9BUG6 496 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 SPNS1Q9H2V7 528 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 ARL15Q9NXU5 204 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 CDH10Q9Y6N8 788 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 PIKFYVEQ9Y2I7 2098 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 LOC102723532A0A0G2JNH3 316 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 F5H5T6 163 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 H3BNC9 293 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 I3L521 148 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 QSOX1O00391 747 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 SCAMP2O15127 329 aaKnown RBP10.23□□□□□ -0.77
USP54-204ENST00000422491 TSPAN9O75954 239 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 ETFAP13804 333 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 GRK4P32298 578 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 IRS1P35568 1242 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 FEN1P39748 380 aaKnown RBP10.23□□□□□ -0.77
USP54-204ENST00000422491 PPP3R1P63098 170 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 C1DQ13901 141 aaKnown RBP10.23□□□□□ -0.77
USP54-204ENST00000422491 LEXMQ3ZCV2 418 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 C10orf120Q5SQS8 335 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 TMIGD1Q6UXZ0 262 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 GHDCQ8N2G8 530 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 SYT14Q8NB59 555 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 SLC37A3Q8NCC5 494 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 CDC26Q8NHZ8 85 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 AP3S1Q92572 193 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 KCTD7Q96MP8 289 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 PPIL3Q9H2H8 161 aaKnown RBP10.23□□□□□ -0.77
USP54-204ENST00000422491 HEXA-AS1Q9H8Q6 139 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 REV1Q9UBZ9 1251 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 YARS2Q9Y2Z4 477 aaKnown RBP10.23□□□□□ -0.77
USP54-204ENST00000422491 KCNE2Q9Y6J6 123 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 PRAMEF33A0A0G2JMD5 474 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 CIB4A0PJX0 185 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 GABRR3A8MPY1 467 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 FAM227AF5H4B4 570 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 BTN3A3O00478 584 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 PRAMEF10O60809 474 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 TRBC1P01850 177 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 TYMPP19971 482 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 AOAHP28039 575 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 WEE1P30291 646 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 TALDO1P37837 337 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 AGFG1P52594 562 aaKnown RBP10.23□□□□□ -0.77
USP54-204ENST00000422491 ALDH6A1Q02252 535 aaKnown RBP10.23□□□□□ -0.77
USP54-204ENST00000422491 RING1Q06587 406 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 SF3A2Q15428 464 aaKnown RBP10.23□□□□□ -0.77
USP54-204ENST00000422491 SF1Q15637 639 aaKnown RBP10.23□□□□□ -0.77
USP54-204ENST00000422491 CDKL4Q5MAI5 379 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 MACC1Q6ZN28 852 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 TRILQ7L0X0 811 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.23□□□□□ -0.77
USP54-204ENST00000422491 NPAS3Q8IXF0 933 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 GPR65Q8IYL9 337 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 OR8H3Q8N146 312 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 IL17RCQ8NAC3 791 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 OR52P1PQ8NH57 321 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 LHFPL5Q8TAF8 219 aa10.23□□□□□ -0.77
USP54-204ENST00000422491 GEMIN6Q8WXD5 167 aaKnown RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms