RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 MLLT3P42568 568 aaPredicted RBP8□□□□□ -1.13
USP54-203ENST00000418501 CDK6Q00534 326 aa8□□□□□ -1.13
USP54-203ENST00000418501 FOLH1Q04609 750 aa8□□□□□ -1.13
USP54-203ENST00000418501 GARNL3Q5VVW2 1013 aa8□□□□□ -1.13
USP54-203ENST00000418501 REEP3Q6NUK4 255 aa8□□□□□ -1.13
USP54-203ENST00000418501 PPP4R4Q6NUP7 873 aa8□□□□□ -1.13
USP54-203ENST00000418501 OR4K14Q8NGD5 310 aa8□□□□□ -1.13
USP54-203ENST00000418501 GEMIN6Q8WXD5 167 aaKnown RBP8□□□□□ -1.13
USP54-203ENST00000418501 PDE7BQ9NP56 450 aa8□□□□□ -1.13
USP54-203ENST00000418501 C1GALT1Q9NS00 363 aa8□□□□□ -1.13
USP54-203ENST00000418501 SMPD3Q9NY59 655 aaPredicted RBP8□□□□□ -1.13
USP54-203ENST00000418501 TAS2R7Q9NYW3 318 aa8□□□□□ -1.13
USP54-203ENST00000418501 AKAP7Q9P0M2 348 aaPredicted RBP8□□□□□ -1.13
USP54-203ENST00000418501 PLCL2Q9UPR0 1127 aa8□□□□□ -1.13
USP54-203ENST00000418501 A0A0J9YVX5 310 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 FEZF1A0PJY2 475 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 OR5K3A6NET4 321 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 EMC8O43402 210 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 CSF2P04141 144 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 PEX2P28328 305 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 KDELR2P33947 212 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 DHPSP49366 369 aaPredicted RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 CCT3P49368 545 aaKnown RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 RGNQ15493 299 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 ZSWIM7Q19AV6 140 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 STK32CQ86UX6 486 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 ARMC8Q8IUR7 673 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 CSNK1A1LQ8N752 337 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 PAPD5Q8NDF8 572 aaKnown RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 ZNF548Q8NEK5 533 aaPredicted RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 CEP76Q8TAP6 659 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 TANKQ92844 425 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 HSPA12BQ96MM6 686 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 PKP2Q99959 881 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 APOL4Q9BPW4 351 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 DPH2Q9BQC3 489 aaPredicted RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 ACTL8Q9H568 366 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 LYRM4Q9HD34 91 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 DCAF13Q9NV06 445 aaKnown RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 AP4B1Q9Y6B7 739 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 LRIT2A6NDA9 550 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 UGT2B11O75310 529 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 TACR1P25103 407 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 CALRP27797 417 aaKnown RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 OR4D2P58180 307 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 GPR18Q14330 331 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 ABHD17CQ6PCB6 329 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 TMEM64Q6YI46 380 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 RRM2BQ7LG56 351 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 C16orf62Q7Z3J2 963 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 PAQR7Q86WK9 346 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 ZDHHC21Q8IVQ6 265 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 WDR48Q8TAF3 677 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 ADAMTS15Q8TE58 950 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 CYGBQ8WWM9 190 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 TEX37Q96LM6 180 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 SLC6A18Q96N87 628 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 PRRG3Q9BZD7 231 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 TMEM38AQ9H6F2 299 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 SLC24A3Q9HC58 644 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 DDX18Q9NVP1 670 aaKnown RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 MRTO4Q9UKD2 239 aaKnown RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 RAB23Q9ULC3 237 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 PRRC2BQ5JSZ5 2229 aaKnown RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 HYKKA2RU49 373 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 TNFSF14O43557 240 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 NCK1P16333 377 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 CNR2P34972 360 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 IL18R1Q13478 541 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 PDK3Q15120 406 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 NDUFAF5Q5TEU4 345 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 YOD1Q5VVQ6 348 aaPredicted RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 LPCAT4Q643R3 524 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 TTC33Q6PID6 262 aaPredicted RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 Q6ZS52 159 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 ADGRG5Q8IZF4 528 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 ACOT4Q8N9L9 421 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 PJA1Q8NG27 643 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 TM4SF18Q96CE8 201 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 TPD52L3Q96J77 140 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 ZNF583Q96ND8 569 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 FAM192AQ9GZU8 254 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 SEMA6AQ9H2E6 1030 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 ERVMER34-1Q9H9K5 563 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 ZCCHC3Q9NUD5 404 aaKnown RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 GMEB1Q9Y692 573 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 V9GYQ6 96 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 DENRO43583 198 aaKnown RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 SLC28A2O43868 658 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 OR10H2O60403 315 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 UBXN7O94888 489 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 IFNW1P05000 195 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 IGHV4-34P06331 123 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 PIM1P11309 404 aaPredicted RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 ATP5A1P25705 553 aaKnown RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 DNAJA1P31689 397 aaKnown RBP7.99□□□□□ -1.13
USP54-203ENST00000418501 FZD2Q14332 565 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 EIPR1Q53HC9 387 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 PRAMEF8Q5VWM4 474 aa7.99□□□□□ -1.13
USP54-203ENST00000418501 PRAMEF7Q5VXH5 474 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms