RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 SLC5A10A0PJK1 596 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 NPPAP01160 153 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 THRBP10828 461 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 MATN1P21941 496 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 NRG3P56975 720 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 ADGRE1Q14246 886 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 ZNF630Q2M218 657 aaPredicted RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 TCTE1Q5JU00 501 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 LARP4Q71RC2 724 aaKnown RBP eCLIP8.69□□□□□ -1.02
LIG4-202ENST00000405925 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 DPP10Q8N608 796 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 SLC45A3Q96JT2 553 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 GPR78Q96P69 363 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 GFM1Q96RP9 751 aaKnown RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 RBM4BQ9BQ04 359 aaKnown RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 RBM4Q9BWF3 364 aaKnown RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 KCNK13Q9HB14 408 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 IFT80Q9P2H3 777 aaPredicted RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 MCM8Q9UJA3 840 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 NEU3Q9UQ49 428 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 CFL2Q9Y281 166 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 N6AMT1Q9Y5N5 214 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 MYL12BO14950 172 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 KHNYNO15037 678 aaKnown RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 SCAMP2O15127 329 aaKnown RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 AGR2O95994 175 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 TCF3P15923 654 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 CCKBRP32239 447 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 RHDQ02161 417 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 CCINQ13939 588 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 CEACAM7Q14002 265 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 GPR18Q14330 331 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 KLHL12Q53G59 568 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 ZNF311Q5JNZ3 666 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 ATG9BQ674R7 924 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 TMEM107Q6UX40 140 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 EID2Q8N6I1 236 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 PIK3C3Q8NEB9 887 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 OR5M3Q8NGP4 307 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 SLC37A2Q8TED4 501 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 GIPC3Q8TF64 312 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 PATE1Q8WXA2 126 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 SMPD3Q9NY59 655 aaPredicted RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 DNAJB9Q9UBS3 223 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 TBC1D29Q9UFV1 150 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 HS3ST3A1Q9Y663 406 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 A0A0A6YYC8 382 aaPredicted RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 I3L1I5 382 aaPredicted RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 EI24O14681 340 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 PSIP1O75475 530 aaKnown RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 DRD2P14416 443 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 FBLP22087 321 aaKnown RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 MC1RQ01726 317 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 ZNF33BQ06732 778 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 METRNLQ641Q3 311 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 NIPAL1Q6NVV3 410 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 RTL4Q6ZR62 310 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 LRRC25Q8N386 305 aaPredicted RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 SVOPQ8N4V2 548 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 KIAA1958Q8N8K9 716 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 FAM81AQ8TBF8 368 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 DPH2Q9BQC3 489 aaPredicted RBP8.69□□□□□ -1.02
LIG4-202ENST00000405925 BRF2Q9HAW0 419 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 SLC35C2Q9NQQ7 365 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 ZSCAN32Q9NX65 697 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 OAZ3Q9UMX2 235 aa8.69□□□□□ -1.02
LIG4-202ENST00000405925 SPAG17Q6Q759 2223 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 TRPM6Q9BX84 2022 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 KPNA4O00629 521 aaPredicted RBP8.68□□□□□ -1.02
LIG4-202ENST00000405925 TNFRSF10CO14798 259 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 RDH16O75452 317 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 EEDO75530 441 aaKnown RBP8.68□□□□□ -1.02
LIG4-202ENST00000405925 CLEC3AO75596 197 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 BCAS2O75934 225 aaPredicted RBP8.68□□□□□ -1.02
LIG4-202ENST00000405925 PGM3O95394 542 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 HEXBP07686 556 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 ZNF888P0CJ79 500 aaPredicted RBP8.68□□□□□ -1.02
LIG4-202ENST00000405925 CHN2P52757 468 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 EIF4EBP2Q13542 120 aaPredicted RBP8.68□□□□□ -1.02
LIG4-202ENST00000405925 PYCR3Q53H96 274 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 EIPR1Q53HC9 387 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 C6orf52Q5T4I8 152 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 REEP3Q6NUK4 255 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 GALNT12Q8IXK2 581 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 TMEM156Q8N614 296 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 ZNF540Q8NDQ6 660 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 OR2L5Q8NG80 312 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 CCL4L1Q8NHW4 92 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 DUSP23Q9BVJ7 150 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 COQ10BQ9H8M1 238 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 CLN6Q9NWW5 311 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 MUTYHQ9UIF7 546 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 MICAL3Q7RTP6 2002 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 TRBV5-4A0A0C4DH59 114 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 PDLIM1O00151 329 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 PEX12O00623 359 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 OR7A17O14581 309 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 PLRG1O43660 514 aaKnown RBP8.68□□□□□ -1.02
LIG4-202ENST00000405925 NOBOXO60393 691 aa8.68□□□□□ -1.02
LIG4-202ENST00000405925 ZBTB11O95625 1053 aaPredicted RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms