RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SYNJ2O15056 1496 aa3.83□□□□□ -1.8
HMGB1-204ENST00000399489 TRAV6A0A075B6T7 132 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 TRBV5-7A0A0A0MS05 114 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 HEATR9A2RTY3 570 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 KCNU1A8MYU2 1149 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 F8VVB4 439 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 F8VWA3 439 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 SDHDO14521 159 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 EXTL3O43909 919 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 ATP6AP2O75787 350 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 RPSAP08865 295 aaKnown RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 STAG3L1P0CL83 205 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 CYP19A1P11511 503 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 B4GALT1P15291 398 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 CYP3A5P20815 502 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 PCMT1P22061 227 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 NMT1P30419 496 aaKnown RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 CSTF2P33240 577 aaKnown RBP eCLIP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 TRIM23P36406 574 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 MAGEA11P43364 429 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 RPL21P46778 160 aaKnown RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 GTF2A1P52655 376 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 NOP14P78316 857 aaKnown RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 MAT1AQ00266 395 aaKnown RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 PDE1BQ01064 536 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 BNC1Q01954 994 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 FAM27E3Q08E93 113 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 GRIK2Q13002 908 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 MAD2L1Q13257 205 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 ENPP2Q13822 863 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 STX1AQ16623 288 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 MTHFSDQ2M296 383 aaKnown RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 AGKQ53H12 422 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 CMPK2Q5EBM0 449 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 CEP78Q5JTW2 689 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 PYHIN1Q6K0P9 492 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 SLC39A4Q6P5W5 647 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 NAPRTQ6XQN6 538 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 DCDC5Q6ZRR9 648 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 ARHGAP22Q7Z5H3 698 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 AMIGO1Q86WK6 493 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 THEM5Q8N1Q8 247 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 BMPERQ8N8U9 685 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 ANKFN1Q8N957 763 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 KCNH5Q8NCM2 988 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 TRMT10AQ8TBZ6 339 aaKnown RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 DDI1Q8WTU0 396 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 SSMEM1Q8WWF3 244 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 SUSD6Q92537 303 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 KAT2BQ92831 832 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 RFT1Q96AA3 541 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 KIAA1143Q96AT1 154 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 PYCR2Q96C36 320 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 GPR137Q96N19 417 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 CASD1Q96PB1 797 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 PANX2Q96RD6 677 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 PANX1Q96RD7 426 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 CBWD1Q9BRT8 395 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 LMF2Q9BU23 707 aaKnown RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 FSD1LQ9BXM9 530 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 ROPN1BQ9BZX4 212 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 PSTPIP2Q9H939 334 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 SGK2Q9HBY8 427 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 EMC3Q9P0I2 261 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 DBF4Q9UBU7 674 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 SEC14L3Q9UDX4 400 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 ADAMTS5Q9UNA0 930 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 RUVBL2Q9Y230 463 aaKnown RBP3.82□□□□□ -1.8
HMGB1-204ENST00000399489 SLC9A8Q9Y2E8 581 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 ATP6V1DQ9Y5K8 247 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 ERCC6L2Q5T890 1561 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 SOGA1O94964 1423 aa3.82□□□□□ -1.8
HMGB1-204ENST00000399489 CCDC88BA6NC98 1476 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PRSS51A0A1B0GVH4 220 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 OR6C65A6NJZ3 312 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PRR23D1E9PI22 279 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PPIAL4DF5H284 164 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 F8W810 466 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 UBE2Q2LH0YL09 131 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ARPC3O15145 178 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 RNF13O43567 381 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 KRT86O43790 486 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 BCAS1O75363 584 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 KRT36O76013 467 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 NEURL1O76050 574 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PIGNO95427 931 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SYNGR4O95473 234 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 MT-CO3P00414 261 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 EGFP01133 1207 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 CHRNA1P02708 482 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PRR23D2P0DMB1 279 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 HAPLN1P10915 354 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 GNSP15586 552 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PRKACAP17612 351 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 UQCRC2P22695 453 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 APOBEC1P41238 236 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 HAAOP46952 286 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SLC6A8P48029 635 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 CSNK2BP67870 215 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 FKBP1BP68106 108 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms